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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGCCCGAGACCAGCTAGTCATTCGTTCTGGCCCTGATACTGAAGTTTTCTGGAATGATACTAGGCAGAAGGCGCCTGAACCTGTTCATAAGCGTCCTgtaagttacttcctgtgtgtatatcccttttgtttacttgactgtttagagcaatgtatatgttatgttaccttcatttgaattaatatcccttatttgtttacttgactgtttagagcacttttatatgttatgttaccttcatttgaattaatgatgttctcttcctatgcag

Basic information

species Arabidopsis thaliana
transcript AT5G27640.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164154414|gb|ES031597.1|ES031597
EST:     TCTGGAATGATACTAGGCAGAAGGCGCCTGAACCTGTTCATAAGCGTCCT                         TATTGGACAGAGAGTTATGTGCAGTGGTCTCCTTTAGGTACA
genomic: TCTGGAATGATACTAGGCAGAAGGCGCCTGAACCTGTTCATAAGCGTCCTgtaagttact ... tcctatgcagTATTGGACAGAGAGTTATGTGCAGTGGTCTCCTTTAGGTACA
EST: gi|164066047|gb|ES038031.1|ES038031
EST:     AAGGCGCCTGAACCTGTTCATAAGCGTCCT                         TATTGGACAGAGAGTTATGTGCAGTGGTCTCCTTTAGGTACATACCTTGTG
genomic: AAGGCGCCTGAACCTGTTCATAAGCGTCCTgtaagttact ... tcctatgcagTATTGGACAGAGAGTTATGTGCAGTGGTCTCCTTTAGGTACATACCTTGTG