1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAAGAGAGGATTCACAGGATTGCAACCTCCTTTTTTCATGAGGAAGGATGTTATGGCCAAGTGCGCACAATTGGCACAGTTCGATGAAGAGCTTTACAAGgtatttaattgttacaaaacatctgtgtacttgtcttgttagagtagttttattcatagaagattgtgttttttttttgtccag
species | Arabidopsis thaliana |
transcript | AT5G27470.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTTCGATGAAGAGCTTTACAAG GTGACTGGTGAAGGAGATGACAAATACCTCATTGCAACTGCTGAGCAGCCTEST: gi|164046166|gb|ES167121.1|ES167121
genomic: GTTCGATGAAGAGCTTTACAAGgtatttaatt ... ttttgtccagGTGACTGGTGAAGGAGATGACAAATACCTCATTGCAACTGCTGAGCAGCCT
EST: GGCCAAGTGCGCACAATTGGCACAGTTCGATGAAGAGCTTTACAAG GTGACTGGTGAAGGAGATGACAAATACCTCATTGCAACTGCEST: gi|86059858|gb|DR355615.1|DR355615
genomic: GGCCAAGTGCGCACAATTGGCACAGTTCGATGAAGAGCTTTACAAGgtatttaatt ... ttttgtccagGTGACTGGTGAAGGAGATGACAAATACCTCATTGCAACTGC
EST: TATGGCCAAGTGCGCACAATTGGCAAAAGTTCGATGAAGAGCTTTACAAG GTGACTGGTGAAGGAGATGACAAATACCTCATTGCAACTGCTGAGCAGCCTEST: gi|47831831|gb|CK121515.1|CK121515
genomic: TATGGCCAAGTGCGCACAATTGGC-ACAGTTCGATGAAGAGCTTTACAAGgtatttaatt ... ttttgtccagGTGACTGGTGAAGGAGATGACAAATACCTCATTGCAACTGCTGAGCAGCCT
EST: TTATGGCCAAGTGCGCACAATTGGCACAGTTCGATGAAGAGCTTTACAAG GTGACTGGTGAAGGAGATGACAAATACCTCATTGCAACTGCTGAGCAGCCT
genomic: TTATGGCCAAGTGCGCACAATTGGCACAGTTCGATGAAGAGCTTTACAAGgtatttaatt ... ttttgtccagGTGACTGGTGAAGGAGATGACAAATACCTCATTGCAACTGCTGAGCAGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGAGAGGATTCACAGGATTGCAACCTCCTTTTTTCATGAGGAAGGATGTTATGGCCAAGTGCGCACAATTGGCACAGTTCGATGAAGAGCTTTACAAGgtatttaattgttacaaaacatctgtgtacttgtcttgttagagtagttttattcatagaagattgtgttttttttttgtccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT