1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TCAATGATTGAGTTGAGCCGTACGCAAGATGAAGAAGTTGGTGATGGGACAACGTCTGTTATTGTTCTAGgtacgaacattcttttttgctaacaaatagtttgtcaatggcttggtttggaccagttttaatgtatttttaactaaagcacaaacaaattacttaaggatattatgggtgctgcagtattcagttcaacatcatgatctctgtttataatcatgggttcttgaagtcctctttttgtttgctttttgccaacag
species | Arabidopsis thaliana |
transcript | AT5G26360.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TACGCAAGATGAAGAAGTTGGTGATGGGACAACGTCTGTTATTGTTCTAG CTGGTGAAATGCTTCACGTTGCAGAAGCGTTTCTTGAGAAGAATTACCATCEST: gi|124854385|gb|EH938822.1|EH938822
genomic: TACGCAAGATGAAGAAGTTGGTGATGGGACAACGTCTGTTATTGTTCTAGgtacgaacat ... ttgccaacagCTGGTGAAATGCTTCACGTTGCAGAAGCGTTTCTTGAGAAGAATTACCATC
EST: TACGCAAGATGAAGAAGTTGGTGATGGGACAACGTCTGTTATTGTTCTAG CTGGTGAAATGCTTCACGTTGCAGAAGCGEST: gi|86074170|gb|DR369927.1|DR369927
genomic: TACGCAAGATGAAGAAGTTGGTGATGGGACAACGTCTGTTATTGTTCTAGgtacgaacat ... ttgccaacagCTGGTGAAATGCTTCACGTTGCAGAAGCG
EST: TACGCAAGATGAAGAAGTTGGTGATGGGACAACGTCTGTTATTGTTCTAG CTGGTGAAATGCTTCACGTTGCAGAAGCGTTTCTTGAGAAGAATTACCATCEST: gi|124752716|gb|EH842846.1|EH842846
genomic: TACGCAAGATGAAGAAGTTGGTGATGGGACAACGTCTGTTATTGTTCTAGgtacgaacat ... ttgccaacagCTGGTGAAATGCTTCACGTTGCAGAAGCGTTTCTTGAGAAGAATTACCATC
EST: TACGCAAGATGAAGAAGTTGGTGATGGGACAACGTCTGTTATTGTTCTAG CTGGTGAAATGCTTCACGTTGCAGAAGCGTTTCTTGAGAAGAATTACCATCEST: gi|47830309|gb|CK119993.1|CK119993
genomic: TACGCAAGATGAAGAAGTTGGTGATGGGACAACGTCTGTTATTGTTCTAGgtacgaacat ... ttgccaacagCTGGTGAAATGCTTCACGTTGCAGAAGCGTTTCTTGAGAAGAATTACCATC
EST: TACGCAAGATGAAGAAGTTGGTGATGGGACAACGTCTGTTATTGTTCTAG CTGGTGAAATGCTTCACGTTGCAGAAGCGTTTCTTGAGAAGAATTACCATCEST: gi|125205496|gb|EL220450.1|EL220450
genomic: TACGCAAGATGAAGAAGTTGGTGATGGGACAACGTCTGTTATTGTTCTAGgtacgaacat ... ttgccaacagCTGGTGAAATGCTTCACGTTGCAGAAGCGTTTCTTGAGAAGAATTACCATC
EST: TGATGGGACAACGTCTGTTATTGTTCTAG CTGGTGAAATGCTTCACGTTGCAGAAGCGTTTCTTGAGAAGAATTACCATCEST: gi|124798343|gb|EH888022.1|EH888022
genomic: TGATGGGACAACGTCTGTTATTGTTCTAGgtacgaacat ... ttgccaacagCTGGTGAAATGCTTCACGTTGCAGAAGCGTTTCTTGAGAAGAATTACCATC
EST: TACGCAAGATGAAGAAGTTGGTGATGGGACAACGTCTGTTATTGTTCTAG CTGGTAGAAATGCTTCACGTTGCAGAAG
genomic: TACGCAAGATGAAGAAGTTGGTGATGGGACAACGTCTGTTATTGTTCTAGgtacgaacat ... ttgccaacagCTGGT-GAAATGCTTCACGTTGCAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAATGATTGAGTTGAGCCGTACGCAAGATGAAGAAGTTGGTGATGGGACAACGTCTGTTATTGTTCTAGgtacgaacattcttttttgctaacaaatagtttgtcaatggcttggtttggaccagttttaatgtatttttaactaaagcacaaacaaattacttaaggatattatgggtgctgcagtattcagttcaacatcatgatctctgtttataatcatgggttcttgaagtcctctttttgtttgctttttgccaacag
- - - - - - - - - - - GCAAGA
- - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - AGAAGT