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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCTTGAGCGTCACATCGACCTTGCCTGAAGACAAAGCTGTTGATTTATATGTACTTGAAAGAGCCTTACTCTCAATGCATTCGTCATGCGGGAATGTGgtaagtgtgatgcaaatcataacttcactacttttgctgggtctgttgttgttgttgttgttgttgtctcactgcgtattttgttgtcaattgtag

Basic information

species Arabidopsis thaliana
transcript AT5G26110.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G26110.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA17G04930.1 (Glycine max), 5'ss of exon 5
TGGCTTGAGCGTCACATCGACCTTGCCTGAAGACAAAGCTGTTGATTTATATGTACTTGAAAGAGCCTTACTCTCAATGCATTCGTCATGCGGGAATGTGgtaagtgtgatgcaaatcataacttcactacttttgctgggtctgttgttgttgttgttgttgttgtctcactg--cgtattttgttgtcaat-tgtag--
||| |||||| |||| || ||  | ||||||||||| ||||||||||| ||||| || ||||||||  |  | ||||||||||| ||||| ||||||||||||||     |    ||  |  | | |||    |  |   |    ||   |  | ||        || ||| |   |  | || |  |||| | |  ||  
TGGTTTGAGCTTCACTTCAACTCTACCTGAAGACAAGGCTGTTGATTTGTATGTTCTAGAAAGAGCTCTTATTTCAATGCATTCATCATGTGGGAATGTGgtaagccaacttttcattttctcctaactgtcatgtcatagaaaattaagga-gatgaaaacagagtttcattaacctgaattagaggtcagtgtacagag

upper sequence: AT5G26110.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA18G06300.1 (Glycine max), 5'ss of exon 5
-TGGCTTGAGCGTCACATCGACCTTGCCTGAAGACAAAGCTGTTGATTTATATGTACTTGAAAGAGCCTTACTCTCAATGCATTCGTCATGCGGGAATGTGgtaagtgtgatgcaaatcataacttcactac--ttttgctgggtctgttgttgttgttgttgttgttgtctcactgcgtattttgttgtcaattgtag-
 ||| |||||| |||| || ||  | || ||||| || ||||||||||| ||||| || ||||||||  |  | ||||||||||||||||| ||||||||||||||     |    ||  |  | | ||| |  |      |    |   |  | ||        ||| |||  |     | ||||   |  |  | |  
TTGGTTTGAGCTTCACTTCAACTCTACCAGAAGATAAGGCTGTTGATTTGTATGTTCTGGAAAGAGCTCTTATTTCAATGCATTCGTCATGTGGGAATGTggtaagcaaacttttcatattcccctaacttcgatgccatagaaaattaaggagatgaaaacagggttttctgtcatgaaaatttgaattagagggcact

upper sequence: AT5G26110.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA02G34690.1 (Glycine max), 5'ss of exon 5
TGGCTTGAGCGTCACATCGACCTTGCCTGAAGACAAAGCTGTTGATTTATATGTACTTGAAAGAGCCTTACTCTCAATGCATTCGTCATGCGGGAATGTGgtaagtgtgatgcaaatcataacttcactacttt--tgctgggtctgttgttgttgttgttgttgttgtctcactgcgtattttgttgtcaattgtag---
                           | |||   |   |||  |||| | ||| |||||||||||  | || ||||||||||| ||||| |||||||||||||||    |     |     | | |||    |  |||    |    |   |  | || |      || | | |  || | ||||    | ||| |    
------------------------AAGTCAAGTGGATTTTGTGTATTTGTGTGTTCTTGAAAGAGCTATTCTGTCAATGCATTCTTCATGTGGGAATGTGgtaagtcaacttgttgtttcctcctaactgtcatcatgccatataaaattaagaagatgatacgagggttttatt-tgtctattgtgagaatttgaattca

upper sequence: AT5G26110.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv07s0151g00550.t01 (Vitis vinifera), 5'ss of exon 5
TGGCTTGAGCGTCACATCGACCTTGCCTGAAGACAAAGCTGTTGATTTATATGTACTTGAAAGAGCCTTACTCTCAATGCATTCGTCATGCGGGAATGTGgtaagtgtgatgcaaatcataacttcactacttttgctgggtctgttgttgttgttgttgttgttgtctcactgcgt-attttgttgtcaattgtag-----
||| || ||| ||||||| ||| | | |||||| ||||||||||||||||||||||||||  | ||||| || ||||||||||| ||||| ||||||||||||||||  | ||   |   | |||   | ||  |     | || || |  || || ||          || | | | |  |||     | ||| |      
TGGGTTAAGCTTCACATCAACCCTTCATGAAGATAAAGCTGTTGATTTATATGTACTTGAGCGGGCCTTGCTATCAATGCATTCTTCATGTGGGAATGTGgtaagtg--aagcgggtgccacctttcattctaatttccagactcttctgcttattttttgctcaaaaacattacttgagattgcatatagttggaaacaac

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116425418|gb|EG468010.1|EG468010
EST:     ATGTACTTGAAAGACCCTTACTCTCAATGCATTCGTCATGCGGGAATGTG                         ATGGATCGTATACTGACGGCGTATAGGAAGTCCTCAAAGCAATGGTCAGCC
genomic: ATGTACTTGAAAGAGCCTTACTCTCAATGCATTCGTCATGCGGGAATGTGgtaagtgtga ... tcaattgtagATGGATCGTATACTGACGGCGTATAGGAAGTCCTCAAAGCAATGGTCAGCC
EST: gi|116425432|gb|EG468024.1|EG468024
EST:     ATGTACTTGAAAGAGCCTTACTCTCAATGCATTCGTCATGCGGGAATGTG                         ATGGATCGTATACTGACGGCGTATAGGAAGTCCTCAAAGCAATGGTCAGCC
genomic: ATGTACTTGAAAGAGCCTTACTCTCAATGCATTCGTCATGCGGGAATGTGgtaagtgtga ... tcaattgtagATGGATCGTATACTGACGGCGTATAGGAAGTCCTCAAAGCAATGGTCAGCC
EST: gi|164048510|gb|ES144204.1|ES144204
EST:     GCGGGAATGTG                         ATGGATCGTATACTGACGGCGTATAGGAAGTCCTCAAAGCAATGGTCAGCC
genomic: GCGGGAATGTGgtaagtgtga ... tcaattgtagATGGATCGTATACTGACGGCGTATAGGAAGTCCTCAAAGCAATGGTCAGCC
EST: gi|86077697|gb|DR373454.1|DR373454
EST:     ATGTACTTGAAAGAGCCTTACTCTCAATGCATTCGTCATGCGGGAATGTG                         ATGGATCGTATACTGACGGCGTATAGGAAGTCCTCAAAGCAATGGTCAGCC
genomic: ATGTACTTGAAAGAGCCTTACTCTCAATGCATTCGTCATGCGGGAATGTGgtaagtgtga ... tcaattgtagATGGATCGTATACTGACGGCGTATAGGAAGTCCTCAAAGCAATGGTCAGCC