1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGATCGCAAGGAACATAACGCCTTTCGTTACACTCTTTCACTGGGACCTTCCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttattgatgtcatgctgcttaataagaaagattacaaaatacgtaaatatttgaaattgcattaaggaaatgattatatatatataaaatatgcgcag
species | Arabidopsis thaliana |
transcript | AT5G25980.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAGEST: gi|47831614|gb|CK121298.1|CK121298
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT AGACGATTTCAAAGATTACGCGGATCTATGNTTCGAGAGATTTGGTGATAGEST: gi|47828775|gb|CK118459.1|CK118459
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGEST: gi|124941624|gb|EL017961.1|EL017961
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAG
EST: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT AGACGATTTCAAAGATTACGCGGAEST: gi|116410417|gb|EG453009.1|EG453009
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGA
EST: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAGEST: gi|116477703|gb|EG520295.1|EG520295
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAGEST: gi|125277407|gb|EL291492.1|EL291492
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT AGACGATTTCAAAGATTACGCGGATEST: gi|125257121|gb|EL271206.1|EL271206
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGAT
EST: CTTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT AGACGATTTCAAAGATTACGCGGEST: gi|116400371|gb|EG442963.1|EG442963
genomic: C-TCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGG
EST: CTCAAATCATTGCA-GATGAATATGAAGGTTTCTTGGACAGAACGATCAT AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAGEST: gi|116410415|gb|EG453007.1|EG453007
genomic: CTCAA-TCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAGEST: gi|47829862|gb|CK119546.1|CK119546
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAGEST: gi|116439048|gb|EG481640.1|EG481640
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAGEST: gi|47828808|gb|CK118492.1|CK118492
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAGEST: gi|116439115|gb|EG481707.1|EG481707
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAGEST: gi|125131250|gb|EL173985.1|EL173985
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: CTCAATCATTGCTAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGEST: gi|116477702|gb|EG520294.1|EG520294
genomic: CTCAATCATTGC-AAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAG
EST: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAGEST: gi|124887972|gb|EH966874.1|EH966874
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: TGAAGGTTTCTTGGACAGAACGATCAT AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAGEST: gi|116444211|gb|EG486803.1|EG486803
genomic: TGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGGCAGAACGATCAT AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAGEST: gi|116410414|gb|EG453006.1|EG453006
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAGEST: gi|124863179|gb|EH947616.1|EH947616
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: GTTTCTTGGACAGAACGATCAT AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAGEST: gi|47829256|gb|CK118940.1|CK118940
genomic: GTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAGEST: gi|116410418|gb|EG453010.1|EG453010
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT AGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAGEST: gi|124878512|gb|EH957949.1|EH957949
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTTTCGAGAGATTTGGTGATAG
EST: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT AGACGATTTCAAAGATTACGCGGAEST: gi|125274643|gb|EL288728.1|EL288728
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGA
EST: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT AGACGATTTCAAAGATTACGCGGATCTATGTTEST: gi|124988541|gb|EL060920.1|EL060920
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGATCTATGTT
EST: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCAT AGACGATTTCAAAGATTACGCGGA
genomic: CCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttatt ... atatgcgcagAGACGATTTCAAAGATTACGCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATCGCAAGGAACATAACGCCTTTCGTTACACTCTTTCACTGGGACCTTCCTCAATCATTGCAAGATGAATATGAAGGTTTCTTGGACAGAACGATCATgtatgttattgatgtcatgctgcttaataagaaagattacaaaatacgtaaatatttgaaattgcattaaggaaatgattatatatatataaaatatgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG