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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTGGTGCAGCATGGAATGTTGCTGATGTACAAAAAGGTTCAAGTGTTGTGATATTTGGTCTTGGAACTGTCGGTCTTTCTgtaagtatagatacagaagttttgatgattctgttttaatggagtctgatgtgggattaatctcctatgagtag

Basic information

species Arabidopsis thaliana
transcript AT5G24760.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G24760.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os02g42520.2 (Oryza sativa), 5'ss of exon 5
GTCTTGGTGCAGCATGGAATGTTGCTGATGTACAAAAAGGTTCAAGTGTTGTGATATTTGGTCTTGGAACTGTCGGTCTTTCTgtaagtatagatacagaagttttgatgattctgttttaatggagtctgatgtgggattaatctcctatgagtag---------------
| ||||||||||| ||||| ||||||||| |    || || || ||||| || |||||||| ||||||||||| || |||||||||||| |   |||||| | |   ||| |  |  || |    ||  |  |  |  ||  |     |||    |                
GGCTTGGTGCAGCCTGGAAGGTTGCTGATATCTCGAAGGGGTCGAGTGTGGTTATATTTGGCCTTGGAACTGTAGGGCTTTCTgtaagtttc--tacagaggct---atgctattagttaatgaaagcatattaggaaatgtaatatttatactcatatcttcctgacttag

upper sequence: AT5G24760.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA09G29070.1 (Glycine max), 5'ss of exon 5
GTCTTGGTGCAGCATGGAATGTTGCTGATGTACAAAAAGGTTCAAGTGTTGTGATATTTGGTCTTGGAACTGTCGGTCTTTCTgtaagtatagatac--agaagttttgatgattctgttttaatggagtctgatgtgggattaatctcctatgagtag--------------------
|||||||||||||||||||||||||||||||   |||||| |||| ||| ||||| ||||||||||||||||| || || |||||||||| |   ||  || | || |    ||  ||  ||         ||| |||  | || | ||| |   |||                     
GTCTTGGTGCAGCATGGAATGTTGCTGATGTGTCAAAAGGATCAACTGTGGTGATTTTTGGTCTTGGAACTGTTGGCCTATCTgtaagtacaaggactaagcaattgtatctatcttggcttctcaacagatga-gtgataatattttccaaattgtaattaactttcctttaaattag

upper sequence: AT5G24760.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA16G23820.1 (Glycine max), 5'ss of exon 7
GTCTTGGTGCAGCATGGAATGTTGCTGATGTACAAAAAGGTTCAAGTGTTGTGATATTTGGTCTTGGAACTGTCGGTCTTTCTgtaagtata--gatacagaagttttgatgattctgttttaatggagtctgatgtgggattaatctcctatgagtag-----------------------
|||| || |||||||||||||||||||| ||   |||||| |||| ||| ||||| ||||||||||||||||| || || |||||||||| |  ||||    | || |   |||  |   ||         | | |    | || | ||| |   |||                        
GTCTGGGCGCAGCATGGAATGTTGCTGACGTGTCAAAAGGATCAACTGTGGTGATTTTTGGTCTTGGAACTGTTGGCCTATCTgtaagtacattgataattcaattgtatcgatcttaacttctcaacagataa-gcaacaatattttccaaattgtaattaattttcctttgatcaattag