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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTACTTCATGCCTCTGATCCTTCGCAATGTCTCGTAATTTGCCCTGACAGACGCAGTAACATCGCCCGGTTCATCAGTGGCATCAACAATCACTCACCgtgagtttctcttctcttctatttggttccttaaagtcgactctctggtcacaacacctgagctccatgttttggtcctgcttctgaattagttggaaccattctagtattgcttgtcctcattgtgtatttgttgacattttgtgaattgcag

Basic information

species Arabidopsis thaliana
transcript AT5G24330.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G24330.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G305124_T01 (Zea mays), 5'ss of exon 1
CTCTACTTCATGCCTCTGATCCTTCGCAATGTCTCGTAATTTGCCCTGACAGACGCAGTAACATCGCCCGGTTCATCAGTGGCATCAACAATCACTCACCgtgagtttctcttctcttctatttggttccttaaagtcgactctctggtcacaacacctgagctccatgttttggtcctgcttctgaattagttggaaccattctagtattgcttgtcctcattgtgtatttgttgacattttgtgaattgcag
| || ||    ||  |    ||  | |   | ||||| || ||||| ||| | ||||| |||||||| ||||||||||  ||||||||||| ||| | ||||||||       | | |    | ||||||            |  ||  ||   ||  |    || ||  |||||     |  |||||    |||      | || |||||| |||  |                                   
CGCTGCTGTCGGCGGCATCGCCGGCCCGCAGCCTCGTCATCTGCCCCGACCGCCGCAGCAACATCGCGCGGTTCATCAACGGCATCAACAACCACACGCCgtgagtagagagccccatgccgtcggttcc------------cattgcgcattgcagtttccgtcgat-ctttggctgaacgactgaaccc-ttg----tgtgcttgtattgattgctcag---------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084245|gb|DR380004.1|DR380004
EST:     AGACGCAGTAACATCGCCCGGTTCATCAGTGGCATCAACAATCACTCACC                         AGAAGGGAGGAAGAAGCAGAACCTGAAGTGTGTGAGGTTCAACATCAACGG
genomic: AGACGCAGTAACATCGCCCGGTTCATCAGTGGCATCAACAATCACTCACCgtgagtttct ... tgaattgcagAGAAGGGAGGAAGAAGCAGAACCTGAAGTGTGTGAGGTTCAACATCAACGG