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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGAATGTGTTACTAGGTTTGTGGGAAAGCCTGCTGCTGTTGTTTTTGGCATGGGCTATGCAACAAATTCGGCTATCATTCCAGTCTTGATTGGAAAGgtatgcattggtttaccctttatgatgaaggcgtatgttgtctcttttctaaaacccatgcttaagttgatattttttcctgtgatgtcttgtatacag

Basic information

species Arabidopsis thaliana
transcript AT5G23670.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G23670.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os11g31640.1 (Oryza sativa), 5'ss of exon 5
TGAGGAATGTGTTACTAGGTTTGTGGGAAAGCCTGCTGCTGTTGTTTTTGGCATGGGCTATGCAACAAATTCGGCTATCATTCCAGTCTTGATTGGAAAGgtatgcattggtttacccttta--tgatgaaggcgtatgttgtctcttttctaaaacccatgcttaagttgatattttttcctgtgatgtcttgtatacag
 ||||| |  ||| |  | ||||| ||||||||||||||| |  | ||||||||||| ||||  ||||| ||||| ||||||||   | |  | |||||||||   ||        |   |   ||||  |  |       |      |    ||||  | ||   | || | ||   |   | | ||||  |   | |||
GGAGGAGTTGGTTGCACGCTTTGTTGGAAAGCCTGCTGCTATCCTATTTGGCATGGGTTATGTTACAAACTCGGCCATCATTCCTTGCCTAGTAGGAAAGgtaca-atcaaaacgtcaagtggttgatctatccagtaacagaaaacatgactaaactta-gcagcaattaacatgactaaatttcatgttat---tccag

upper sequence: AT5G23670.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G010202_T02 (Zea mays), 5'ss of exon 5
TGAGGAATGTGTTACTAGGTTTGTGGGAAAGCCTGCTGCTGTTGTTTTTGGCATGGGCTATGCAACAAATTCGGCTATCATTCCAGTCTTGATTGGAAAGgtatgcattggtttaccc---tttatgatgaaggcgtatgttgtctcttttctaaaacccatgcttaagttgatattttttcctgtgatgtcttgtatacag
 || ||   |||| | || ||||| || |||||||| ||| || ||||||||||||||||||  ||||| || |||||||||||||   || |||| ||||||||   |   ||       | |||| | ||    | |||| | |  |||  |  | |  |||   || |||   |     |||| ||   ||| |     
CGAAGAGCTTGTTGCAAGATTTGTTGGTAAGCCTGCAGCTATTCTTTTTGGCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAGgtatgttctatgttgtgaagatatatgctcaaactttctgttttgttcttttcatgagctctgc---agctgaggcta----ctgtaataa-ttgcag----

upper sequence: AT5G23670.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 5
TGAGGAATGTGTTACTAGGTTTGTGGGAAAGCCTGCTGCTGTTGTTTTTGGCATGGGCTATGCAACAAATTCGGCTATCATTCCAGTCTTGATTGGAAAGgtatgcattggtttaccctttatgatgaaggcgtatgttgtctcttttctaaaacccatgcttaagttgatattttttcctgtgatgtcttgtatacag
 ||||| |||||| | |  ||||| || ||||| |||||| | |||||||| ||||||||||  || || || |||||  ||||||||||||| |||||||| ||      ||||                 ||   ||  |  | ||   | ||  ||| ||   |  |||||  ||  | | |  |  | | |||||
GGAGGAGTGTGTTGCAAAATTTGTTGGGAAGCCAGCTGCTATAGTTTTTGGTATGGGCTATGTGACGAACTCTGCTATTCTTCCAGTCTTGATGGGAAAGgtttgtga-aattta-----------------gtggttttaccttgttgagacactaatgtttgcatgaatattcattgatataactttcttt-tacag

upper sequence: AT5G23670.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA02G07250.1 (Glycine max), 5'ss of exon 5
TGAGGAATGTGTTACTAGGTTTGTGGGAAAGCCTGCTGCTGTTGTTTTTGGCATGGGCTATGCAACAAATTCGGCTATCATTCCAGTCTTGATTGGAAAGgtatgcattggtttaccctttatgatgaaggcgtatgttgtctcttttctaaaacccatgcttaagttgatattttttcctgtgatgtcttgtatacag
 ||||| |||||| | |  ||||| || ||||| |||||| | |||||||| ||||||||||  ||||| || |||||  ||||||||||||| || ||||| ||      ||||                 ||   ||  |  | ||   | ||  ||| ||   |   |||   ||  ||| |  |  | | | |||
GGAGGAGTGTGTTGCAAACTTTGTTGGGAAGCCAGCTGCTATAGTTTTTGGTATGGGCTATGTGACAAACTCTGCTATTCTTCCAGTCTTGATGGGGAAGgtttgtga-aattta-----------------gtggttttaccttgttgagacactaatgattgcatgattatgcgttgatgtaactttcttt-tgcag

upper sequence: AT5G23670.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 5
TGAGGAATGTGTTACTAGGTTTGTGGGAAAGCCTGCTGCTGTTGTTTTTGGCATGGGCTATGCAACAAATTCGGCTATCATTCCAGTCTTGATTGGAAAGgtatgcattggttta--------ccctttatgatg---aaggcgtatgt--tgtctcttttctaaaacccatgcttaagttgatattttttcctgtgatgtcttg-tatacag
 |||||||||||| | |  ||||| ||||||||||||||  | || ||||||||||||||||  ||||| || |||||| |||| ||| ||||||| ||||||| || |  ||||           | |||  ||   ||||| |||||  ||  |      | ||  |  |  | ||  ||| ||| || | |    |||  || |  ||||
GGAGGAATGTGTTGCAAACTTTGTTGGAAAGCCTGCTGCAATAGTCTTTGGCATGGGCTATGTGACAAACTCTGCTATCCTTCCGGTCCTGATTGGGAAGgtattcagttatttaaattgatattgtctatattgtacaaggcttatgtaatgcatgggcattgaattctttattcaatgtgaaattctt-ctttcattgtgatgattcacag