Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACGTCTCAAGCAATGATTTGTGTGGAACAATCCCAACAAACGGACCCTTTGCTCACATTCCTTTACAGAAgtaagtttcttctttcacttagccaacaaagcttcttcataacgtttcctctgcattttgcattttttgtctcttgtaagtagtctttgatacagacatcaattgaatcatatgtttcgtataataaactgataaagttgcatatgagcatttgtacctaataacacaaaacaatggtgcag

Basic information

species Arabidopsis thaliana
transcript AT5G21090.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116443563|gb|EG486155.1|EG486155
EST:     TGTGGAACAATCCCAACAAACGGACCCTTTGCTCACATTCCTTTACAGAA                         CTTTGAGAACAACCCGAGATTGGAGGGACCGGAATTACTCGGTCTTGCAAG
genomic: TGTGGAACAATCCCAACAAACGGACCCTTTGCTCACATTCCTTTACAGAAgtaagtttct ... aatggtgcagCTTTGAGAACAACCCGAGATTGGAGGGACCGGAATTACTCGGTCTTGCAAG
EST: gi|164190098|gb|ES172260.1|ES172260
EST:     TGTGGAACAATCCCAACAAACGGACCTTTTGCTCACATTCCTTTACAGAA                         CTTTGAGAACAACCCGAGGTTGGAGGGACCGGAATTACTCGGTCTTGCAAG
genomic: TGTGGAACAATCCCAACAAACGGACCCTTTGCTCACATTCCTTTACAGAAgtaagtttct ... aatggtgcagCTTTGAGAACAACCCGAGATTGGAGGGACCGGAATTACTCGGTCTTGCAAG
EST: gi|125013318|gb|EL085587.1|EL085587
EST:     GTTGGAACAATCCCAACAAACGGACCCTTTGCTCACATTCCTTTACAGAA                         CTTTGAGAACAACCCGAGATTGGAGGGACCGGAATTACTCGGT
genomic: G-TGGAACAATCCCAACAAACGGACCCTTTGCTCACATTCCTTTACAGAAgtaagtttct ... aatggtgcagCTTTGAGAACAACCCGAGATTGGAGGGACCGGAATTACTCGGT
EST: gi|124988152|gb|EL060558.1|EL060558
EST:     AACGGACCCTTTGCTCACATTCCTTTACAGAA                         CTTTGAGAACAACCCGAGATTGGAGGGACCGGAATTACTCGGTCTTGCAAG
genomic: AACGGACCCTTTGCTCACATTCCTTTACAGAAgtaagtttct ... aatggtgcagCTTTGAGAACAACCCGAGATTGGAGGGACCGGAATTACTCGGTCTTGCAAG
EST: gi|125011496|gb|EL083765.1|EL083765
EST:     CAACAAACGGACCCTTTGCTCACATTCCTTTACAGAA                         CTTTGAGAACAACCCGAGATTGGAGGGACCGGAATTACTCGGTCTTGCAAG
genomic: CAACAAACGGACCCTTTGCTCACATTCCTTTACAGAAgtaagtttct ... aatggtgcagCTTTGAGAACAACCCGAGATTGGAGGGACCGGAATTACTCGGTCTTGCAAG
EST: gi|124716141|gb|EH807543.1|EH807543
EST:     GGAACAATCCCAACAAACGGACCCTTTGCTCACATTCCTTTACAGAA                         CTTTGAGAACAACCCGAGATTGGAGGGACCGGAATTACTCGGTCTTGCAAG
genomic: GGAACAATCCCAACAAACGGACCCTTTGCTCACATTCCTTTACAGAAgtaagtttct ... aatggtgcagCTTTGAGAACAACCCGAGATTGGAGGGACCGGAATTACTCGGTCTTGCAAG
EST: gi|152038285|gb|BP812943.2|BP812943
EST:     TGTGGAACAATCCCAACAAACGGACCCTTTGCTCACATTCCTTTACAGAA                         CTTTGAGAACAACCCGAGATTGGAGGGACCGGAATTACTCGGTCTTGCAAG
genomic: TGTGGAACAATCCCAACAAACGGACCCTTTGCTCACATTCCTTTACAGAAgtaagtttct ... aatggtgcagCTTTGAGAACAACCCGAGATTGGAGGGACCGGAATTACTCGGTCTTGCAAG