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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACATTACGACAAATTGGCTTTGCATCCGCGATTCATCCGCCATGAATCTACTgtaggtgaaacacagcttgtgtatagagtataacactattatatcacattttagtactcatttgaaaatgaaactagttgtaaacatgtggtggtattgttggctctatacagtaggtagtgaaaagcttttgcgcctgacatatgtttatttatag

Basic information

species Arabidopsis thaliana
transcript AT5G21060.3
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19876073|gb|AU236904.1|AU236904
EST:     ATTACGACAAATTGGCTTTGCATCCGCGATTCATCCGCCATGAATCTACT                         GTTGGTGCTGGTCTTCCTGTCATCGCATCCTTGAACCGCATAATTTCGTCT
genomic: ATTACGACAAATTGGCTTTGCATCCGCGATTCATCCGCCATGAATCTACTgtaggtgaaa ... ttatttatagGTTGGTGCTGGTCTTCCTGTCATCGCATCCTTGAACCGCATAATTTCGTCT
EST: gi|125287322|gb|EL301407.1|EL301407
EST:     TTACGACAAATTGGCTTTGCATCCGCGATTCATCCGCCATGAATCTACT                         GTTGGTGCTGGTCTTCCTGTCATCGCATCCTTGAACCGCATAA
genomic: TTACGACAAATTGGCTTTGCATCCGCGATTCATCCGCCATGAATCTACTgtaggtgaaa ... ttatttatagGTTGGTGCTGGTCTTCCTGTCATCGCATCCTTGAACCGCATAA
EST: gi|164044237|gb|ES211292.1|ES211292
EST:     CGACAAATTGGCTTTGCATCCGCGATTCTATCCGCCATGAATCTACT                         GTTGGTGCTGGTCTTCCTGTCATCGCATCCTTGAACCGCATAATTTCG
genomic: CGACAAATTGGCTTTGCATCCGCGATTC-ATCCGCCATGAATCTACTgtaggtgaaa ... ttatttatagGTTGGTGCTGGTCTTCCTGTCATCGCATCCTTGAACCGCATAATTTCG