1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ACACTGACTGTACTTTCATCAGAGTTTCTGGTTCTGAGCTGGTCCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGAGAACTTTTTGTGATGGCAAGgtttgtacatgctagtccttatttaatatttcaagcatggtaaaagtggtaggttggaaaagatggaacttttgacacgataaatcttttacatgcccgt...
species | Arabidopsis thaliana |
transcript | AT5G20000.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTTCTAGAATGGTCAGAGAACTTTTTGTGATGGCAAG GGAGCATGCACCATCAATCATCTTCATGGEST: gi|124934033|gb|EL011138.1|EL011138
genomic: GTTCTAGAATGGTCAGAGAACTTTTTGTGATGGCAAGgtttgtacat ... tggttttcagGGAGCATGCACCATCAATCATCTTCATGG
EST: CTTTTTGTGATGGCAAG GGAGCATGCACCATCAATCATCTTCATGGATGAAATCGATAGTATTGGGTCEST: gi|124847090|gb|EH931527.1|EH931527
genomic: CTTTTTGTGATGGCAAGgtttgtacat ... tggttttcagGGAGCATGCACCATCAATCATCTTCATGGATGAAATCGATAGTATCGGGTC
EST: TACATTGGAGAAGGTTCTAGAATGGTCAGAGAACTTTTTGTGATGGCAAG GGAGCATGACACCATCAATCATCTTCATGGA
genomic: TACATTGGAGAAGGTTCTAGAATGGTCAGAGAACTTTTTGTGATGGCAAGgtttgtacat ... tggttttcagGGAGCATG-CACCATCAATCATCTTCATGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACACTGACTGTACTTTCATCAGAGTTTCTGGTTCTGAGCTGGTCCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGAGAACTTTTTGTGATGGCAAGgtttgtacatgctagtccttatttaatatttcaagcatggtaaaagtggtaggttggaaaagatggaacttttgacacgataaatcttttacatgcccgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaagat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acgataaa