1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ACACTGACTGTACTTTCATAAGAGTTTCTGGTTCCGAGCTTGTCCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGAGAACTTTTTGTGATGGCAAGgttagtatatggtagtccctattttaaatttcaagcatggtaatagtggttgataggaaaatatggaactgttgataagataacatcttttaacatgtcc...
species | Arabidopsis thaliana |
transcript | AT5G19990.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTTTTGTGATGGCAAG GGAGCATGCACCATCAATCATCTTCATGGATGAAATCGATAGTATTGGGTCEST: gi|124746421|gb|EH836753.1|EH836753
genomic: TTTTTGTGATGGCAAGgttagtatat ... tggttttcagGGAGCATGCACCATCAATCATCTTCATGGATGAAATCGATAGTATTGGGTC
EST: TACATTGGAGAAGGTTCTAGAATGGTCAGAGAACTTTTTGTGATGGCAAG GGAGCATGCACCATCAAT
genomic: TACATTGGAGAAGGTTCTAGAATGGTCAGAGAACTTTTTGTGATGGCAAGgttagtatat ... tggttttcagGGAGCATGCACCATCAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACACTGACTGTACTTTCATAAGAGTTTCTGGTTCCGAGCTTGTCCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGAGAACTTTTTGTGATGGCAAGgttagtatatggtagtccctattttaaatttcaagcatggtaatagtggttgataggaaaatatggaactgttgataagataacatcttttaacatgtcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagataac