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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTGCGATTACAGAAAGTAGAGTTACTACAGTCCAGTGCTTGTCTGGTACTGGTTCGTTGAGAGTTGGGGCTGAGTTTCTCAAAACACACTACCACCAAgtaaacttctctctatttagttttttattatatttgacagtcattgaattatgtaatcaaacaagtgttgcttactatggttctcatccttccag

Basic information

species Arabidopsis thaliana
transcript AT5G19550.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116439194|gb|EG481786.1|EG481786
EST:     CTGGTTCGTTGAGAGTTGGGGCTGAGTTTCTCAAAACACACTACCACCAA                         AGTGTCATTTACATTCCAAAACCAACTTGGGGGAACCATCCCAAAGTTTTC
genomic: CTGGTTCGTTGAGAGTTGGGGCTGAGTTTCTCAAAACACACTACCACCAAgtaaacttct ... atccttccagAGTGTCATTTACATTCCAAAACCAACTTGGGGGAACCATCCCAAAGTTTTC
EST: gi|124934191|gb|EL011282.1|EL011282
EST:     CTGGTTCGTTGAGAGTTGGGGCTGAGTTTCTCAAAACACACTACCACCAA                         AGTGTCATTTACATTCCAAAGCCAACTTGGGGGAACCA
genomic: CTGGTTCGTTGAGAGTTGGGGCTGAGTTTCTCAAAACACACTACCACCAAgtaaacttct ... atccttccagAGTGTCATTTACATTCCAAAACCAACTTGGGGGAACCA
EST: gi|116439128|gb|EG481720.1|EG481720
EST:     CTGGTTCGTTGAGAGTTGGGGCTGAGTTTCTCAAAACACACTACCACCAA                         AGTGTCATTTACATTCCAAAACCAACTTGGGGGAACCATCCCAAAGTTTTC
genomic: CTGGTTCGTTGAGAGTTGGGGCTGAGTTTCTCAAAACACACTACCACCAAgtaaacttct ... atccttccagAGTGTCATTTACATTCCAAAACCAACTTGGGGGAACCATCCCAAAGTTTTC
EST: gi|116442567|gb|EG485159.1|EG485159
EST:     CTGGTTCGTTGAGAGTTGGGGCTGAGTTTCTCAAAACACACTACCACCAA                         AGTGTCATTTACATTCCAAAACCAACTTGGGGGAACCATCCCAAAGTTTTC
genomic: CTGGTTCGTTGAGAGTTGGGGCTGAGTTTCTCAAAACACACTACCACCAAgtaaacttct ... atccttccagAGTGTCATTTACATTCCAAAACCAACTTGGGGGAACCATCCCAAAGTTTTC