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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGAGAGACGCGGCTACTGGAAGAGGAGTGATGTTTGGTACCGAAGCTTTGCTTAACGAGCACGGAAAGACCATATCAGGGCAGCGTTTTGTCATCCAGgtgacctttcttttattgcggtttcctgcgagccaaagaaacttttcttattctggtttacatattggttcattag

Basic information

species Arabidopsis thaliana
transcript AT5G18170.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G18170.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G178415_T02 (Zea mays), 5'ss of exon 6
AGGGAGAGACGCGGCTACTGGAAGAGGAGTGATGTTTGGTACCGAAGCTTTGCTTAACGAGCACGGAAAGACCATATCAGGGCAGCGTTTTGTCATCCAGgt-gacctttcttttattgcggtttcctgcgagccaaagaaacttttctta-----ttctggtttacat--attggttcattag----------------
 || |||||||| ||||||||||| |||||  |||||| ||| ||||||||||||   ||||| || ||   |||  |||| |||||||| ||||| ||||| ||   |   |   ||  |  ||  | |     |||||  |   ||  |     ||   |    | |  ||||  | ||  |                
GGGAAGAGACGCCGCTACTGGAAGGGGAGTTCTGTTTGCTACTGAAGCTTTGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtgtgtaggttaggccttattacttttaaaagatccacatccgagaagctttcagaccccgtcgattgcatgatatgcgccttccggctccga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116386886|gb|EG429478.1|EG429478
EST:     TGCTTAACGAGCACGGAAAGACCATATCAGGGCAGCGTTTTGTCATCCAG                         GGGTTTGGTAATGTGGGTTCTTGGGCGGCAAAGCTGATAAGTGAAAAGGGT
genomic: TGCTTAACGAGCACGGAAAGACCATATCAGGGCAGCGTTTTGTCATCCAGgtgacctttc ... ggttcattagGGATTTGGTAATGTGGGTTCTTGGGCGGCAAAGCTGATAAGTGAAAAGGGT