Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGCTTGATGATGCTGATAACATATGTGGGGCAGTACTGAGTGTCCGTTTCAACGAGGACATCATTAGTGTATGGAATCGCAATGCTTCTGACCATCAGgtgagaaaactgttcacaagaagaactgtctctctccctctccttttgattggtacttacacagtgcaatgttttccttaaacag

Basic information

species Arabidopsis thaliana
transcript AT5G18110.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G18110.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA02G08010.3 (Glycine max), 5'ss of exon 5
CCAGCTTGATGATGCTGATAACATATGTGGGGCAGTACTGAGTGTCCGTTTCAACGAGGACATCATTAGTGTATGGAATCGCAATGCTTCTGACCATCAGgtgagaaaactgttcacaagaagaactgtctctctccctctccttttgattggtactta-cacagt-gcaatgttttccttaaacag-----------------------------------
|||  | ||| |||  |||||||||||||| |||||||| ||  | |||||||||||||| ||  | ||||| ||||||||||||||||| |||||||||||  | |   | ||    |    |  ||| | |     | |   ||      || || |  |  || ||  | |||   ||| | |                                    
CCAATTGGATTATGGGGATAACATATGTGGTGCAGTACTAAGCATTCGTTTCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggca--ttattatggaccctatttgtatatgcatatgtaaattatgcatgtcctcagtattgttgctttttttcttttatagaagcatccttagtattgttcctgctttctcattacag

upper sequence: AT5G18110.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA16G27010.2 (Glycine max), 5'ss of exon 5
CCAGCTTGATGATGCTGATAACATATGTGGGGCAGTACTGAGTGTCCGTTTCAACGAGGACATCATTAGTGTATGGAATCGCAATGCTTCTGACCATCAGgtgagaaaactgttcacaagaagaactgtctctctccctctccttttgattggtacttacacagtgcaatgttttccttaaacag--------------------------------
     | ||| |||  |||||||||||||| |||||||| ||  | || ||||| ||||| ||  | ||||| ||||||||||||||||| |||||||||||  | |   | ||    |    |  ||| | |     | | | ||      || ||||   | ||     ||||  |  ||                                   
----TTGGATTATGGGGATAACATATGTGGTGCAGTACTTAGCATTCGATTCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGGTTGgca--ttattatggaccctatttgtatttacatatgtacattatgcacgtcctta-gtattgttccttttttttagaagcatccttagtattgttcctgctttctcattacag

upper sequence: AT5G18110.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA16G27010.1 (Glycine max), 5'ss of exon 6
CCAGCTTGATGATGCTGATAACATATGTGGGGCAGTACTGAGTGTCCGTTTCAACGAGGACATCATTAGTGTATGGAATCGCAATGCTTCTGACCATCAGgtgagaaaactgttcacaagaagaactgtctctctccctctccttttgattggtacttacacagtgcaatgttttccttaaacag--------------------------------
|||  | ||| |||  |||||||||||||| |||||||| ||  | || ||||| ||||| ||  | ||||| ||||||||||||||||| |||||||||||  | |   | ||    |    |  ||| | |     | | | ||      || ||||   | ||     ||||  |  ||                                   
CCAATTGGATTATGGGGATAACATATGTGGTGCAGTACTTAGCATTCGATTCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggca--ttattatggaccctatttgtatttacatatgtacattatgcacgtcctta-gtattgttccttttttttagaagcatccttagtattgttcctgctttctcattacag

upper sequence: AT5G18110.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv08s0007g07290.t01 (Vitis vinifera), 5'ss of exon 5
CCAGCTTGATGATGCTGATAACATATGTGGGGCAGTACTGAGTGTCCGTTTCAACGAGGACATCATTAGTGTATGGAATCGCAATGCTTCTGACCATCAGgtgagaaaactgttcacaagaagaactgtctctctccctctccttttgattggtacttacacagtgcaatgttttccttaaacag
||| |||||| ||| ||||||||||||||| || ||||| ||  | |||||||| || || ||  | ||||| |||||||||||||| || || |||||||| || || |  |     |  |  | | |     |  || |  || ||     || |   ||  ||   |  ||||  | |    
CCAACTTGATTATGGTGATAACATATGTGGTGCTGTACTAAGCATTCGTTTCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaaccactaattcactactattctgatattttctgtgtttgtgtacaatattgtgaccttgatttactttcaattag---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116398426|gb|EG441018.1|EG441018
EST:     TCAACGAGGACATCATTAGTGTATGGAATCGCAATGCTTCTGACCATCAG                         GCAGTGATGGGTTTGAGAGACTCAATCAAGCGGCATTTGAAGTTGCCTCAT
genomic: TCAACGAGGACATCATTAGTGTATGGAATCGCAATGCTTCTGACCATCAGgtgagaaaac ... ccttaaacagGCAGTGATGGGTTTGAGAGACTCAATCAAGCGGCATTTGAAGTTGCCTCAT
EST: gi|164029603|gb|ES079651.1|ES079651
EST:     CAATGCTTCTGACCATCAG                         GCAGTGATGGGTTTGAGAGACTCAATCAAGCGGCATTTGAAGTTGCCTCAT
genomic: CAATGCTTCTGACCATCAGgtgagaaaac ... ccttaaacagGCAGTGATGGGTTTGAGAGACTCAATCAAGCGGCATTTGAAGTTGCCTCAT
EST: gi|116398425|gb|EG441017.1|EG441017
EST:     TCAACGAGGACATCATTAGTGTATGGAATCGCAATGCTTCTGACCATCAG                         GCAGTGATGGGTTTGAGAGACTCAATCAAGCGGCATTTGAAGTTGCCTCAT
genomic: TCAACGAGGACATCATTAGTGTATGGAATCGCAATGCTTCTGACCATCAGgtgagaaaac ... ccttaaacagGCAGTGATGGGTTTGAGAGACTCAATCAAGCGGCATTTGAAGTTGCCTCAT
EST: gi|116398424|gb|EG441016.1|EG441016
EST:     TCAACGAGGACATCATTAGTGTATGGAATCGCAATGCTTCTGACCATCAG                         GCAGTGATGGGTTTGAGAGACTCA
genomic: TCAACGAGGACATCATTAGTGTATGGAATCGCAATGCTTCTGACCATCAGgtgagaaaac ... ccttaaacagGCAGTGATGGGTTTGAGAGACTCA
EST: gi|124804316|gb|EH892195.1|EH892195
EST:     CGAGGACATCATTAGTGTATGGAATCGCAATGCTTCTGACCATCAG                         GCAGTGATGGGTT
genomic: CGAGGACATCATTAGTGTATGGAATCGCAATGCTTCTGACCATCAGgtgagaaaac ... ccttaaacagGCAGTGATGGGTT
EST: gi|116398423|gb|EG441015.1|EG441015
EST:     TCAACGAGGACATCATTAGTGTATGGAATCGCAATGCTTCTGACCATCAG                         GCAGTGATGGGTTTGAGAGACTCAATCAAGCGGCATTTGAAGTTGCCTCAT
genomic: TCAACGAGGACATCATTAGTGTATGGAATCGCAATGCTTCTGACCATCAGgtgagaaaac ... ccttaaacagGCAGTGATGGGTTTGAGAGACTCAATCAAGCGGCATTTGAAGTTGCCTCAT