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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACCGCTTAGTGGGCAGTATTCCATACTCGGGAGGGCGGTTGTTGTGCATGCGGATCCTGATGACCTTGGGAAAGgtagaaacttcttttagcctttggatatccatatggtccaatgtcacaatatgcaaattgagttgtcgaagtttaagagtaatatcacaaaagcaatcactgtagtttcatgtagttgtcatcag

Basic information

species Arabidopsis thaliana
transcript AT5G18100.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G18100.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM5G891739_T01 (Zea mays), 5'ss of exon 5
ATACCGCTTAGTGGGCAGTATTCCATACTCGGGAGGGCGGTTGTTGTGCATGCGGATCCTGATGACCTTGGGAAAGgtagaaacttcttttagcctttggatatccatatggtccaatgtcacaatatgcaaattgagttgtcgaagtttaagagtaatatcacaaaagcaatcactgtagtttcatgtagttgtcatcag
||  |  | |||||||   ||||||| || || ||||| |||||||| ||||| |||||||||||||| ||||  ||||   | | ||| ||          |   ||||       |||  |  | |  |||||||        |  |       | |||  |  |   | |||   |   || |  |            
ATTTCATTGAGTGGGCCTCATTCCATTCTGGGAAGGGCAGTTGTTGTACATGCTGATCCTGATGACCTAGGGAGGGgtaagca-tgcttgtattaccattgcaattatat-------tgtagctctttaaaaattgaa------gatctctcccccattatgccttatatattcatcattaatttagatg-----------

upper sequence: AT5G18100.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA16G27020.1 (Glycine max), 5'ss of exon 5
ATACCGCTTAGTGGGCAGTATTCCATACTCGGGAGGGCGGTTGTTGTGCATGCGGATCCTGATGACCTTGGGAAAGgtagaaacttct--tttagcctttggatatccatatggtccaatgtcacaatatgcaaattgagttgtcgaagtttaagagtaatatcacaaaagcaatcactgtagtttcatgtagttgtcatcag
|| || || | |||     | |||||| | || ||||| |||||||||||||| ||||||||||| ||||| |  ||||  |  ||    ||| ||||  |   ||   | |       | ||    | | |||| |      |  || | ||    |  | |  | | ||  ||    || ||||                 
ATTCCTCTAACTGGAGTTCACTCCATAATTGGAAGGGCCGTTGTTGTGCATGCTGATCCTGATGATCTTGGAAGGGgtaagattttaaaatttggcctcagatcat--gtttcacttggtttcctcttgttcaaact------ttaaaatgtagcctttcttttcccatagtcat----gttgttttg---------------

upper sequence: AT5G18100.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv08s0007g07280.t01 (Vitis vinifera), 5'ss of exon 5
ATACCGCTTAGTGGGCAGTATTCCATACTCGGGAGGGCGGTTGTTGTGCATGCGGATCCTGATGACCTTGGGAAAGgtagaaacttcttttagcctttggatatccatatggtccaatgtcacaa--tatgcaaattgagttgtcgaagtttaagagtaatatcacaaaagcaatcactgtagtttcatgtagttgtcatcag
||  |  | ||||||||| ||||||| || || ||||| |||||||||||||| ||||||||||| ||||| | |||||         |||||| ||| ||  ||||   |  ||||| |    |  | ||  | ||  ||| | ||||||||  || |||   || | |   || | | |   |                  
ATTTCATTAAGTGGGCAGCATTCCATTCTGGGAAGGGCAGTTGTTGTGCATGCTGATCCTGATGATCTTGGAAGAGgtatgg----tctttagcattttga--tcca---gaaccaatcttgagagctttgagacttttgttttggaagtttactag-aatccaaccagaaagatgaatctcaatg-----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125199841|gb|EL214795.1|EL214795
EST:     ACTCGGGAGGGCGGTTGTTGTGCATGCGGATCCTGATGACCTTGGGAAAG                         GTACCAAGCATTAGTTCTTAGATTCGTGATGTGCTTTATCGA
genomic: ACTCGGGAGGGCGGTTGTTGTGCATGCGGATCCTGATGACCTTGGGAAAGgtagaaactt ... ttgtcatcagGTACCAAGCATTAGTTCTTAGATTCGTGATGTGCTTTATCGA