1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATACCGCTTAGTGGGCAGTATTCCATACTCGGGAGGGCGGTTGTTGTGCATGCGGATCCTGATGACCTTGGGAAAGgtagaaacttcttttagcctttggatatccatatggtccaatgtcacaatatgcaaattgagttgtcgaagtttaagagtaatatcacaaaagcaatcac...
species | Arabidopsis thaliana |
transcript | AT5G18100.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GACCTTGGGAAAG GAGGGCACAAGCTTAGCAAATCAACTGGAAACGCAGGCTCGAGAGTTGGATEST: gi|19798317|gb|AU229784.1|AU229784
genomic: GACCTTGGGAAAGgtagaaactt ... tactgtgcagGAGGGCACAAGCTTAGCAAATCAACTGGAAACGCAGGCTCGAGAGTTGGAT
EST: ACTC-GGAGGGCGGTTTTTGTGCATGCGGATCCTGATGACCTTGGGAAAG GAGGGCACAAGCTTAGCAAATCAACTGGAAACGCAGGCTCGAGAGTTGGATEST: gi|19877759|gb|AU238590.1|AU238590
genomic: ACTCGGGAGGGCGGTTGTTGTGCATGCGGATCCTGATGACCTTGGGAAAGgtagaaactt ... tactgtgcagGAGGGCACAAGCTTAGCAAATCAACTGGAAACGCAGGCTCGAGAGTTGGAT
EST: ACTCGGGAGGGCGGTTGTTGTGCATGCGGATCCTGATGACCTTGGGAAAG GAGGGCACAAGCTTAGCAAATCAACTGGAAACGCAGGCTCGAGAGTTGGAT
genomic: ACTCGGGAGGGCGGTTGTTGTGCATGCGGATCCTGATGACCTTGGGAAAGgtagaaactt ... tactgtgcagGAGGGCACAAGCTTAGCAAATCAACTGGAAACGCAGGCTCGAGAGTTGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACCGCTTAGTGGGCAGTATTCCATACTCGGGAGGGCGGTTGTTGTGCATGCGGATCCTGATGACCTTGGGAAAGgtagaaacttcttttagcctttggatatccatatggtccaatgtcacaatatgcaaattgagttgtcgaagtttaagagtaatatcacaaaagcaatcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagagtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaagca