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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACCGTCTTTCGTCAACAGCTTGAACTTGCAAAGGAATTGAAGAAACCTGCGTCAGTTCATTGTGTTCGTGCATTTGGGGATCTACTCGAGATATTAAAgtatgatcttcggctttatattctcatgtgttgctacaattatgtcaatgtgttcttatgatgtgttattgtaatatgcag

Basic information

species Arabidopsis thaliana
transcript AT5G17570.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G17570.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os04g48820.2 (Oryza sativa), 5'ss of exon 5
TTACCGTCTTTCGTCAACAGCTTGAACTTGCAAAGGAATTGAAGAAACCTGCGTCAGTTCATTGTGTTCGTGCATTTGGGGATCTACTCGAGATATTAAAgtatgatcttcggctttatattctca-tgtgtt---gctacaattatgtcaatgtgtt-cttatgatgtgttatt--gtaatatgcag--------------
||   || || |  || || ||||||||||| ||||| ||||| || ||||  || ||||||||||| || || ||||| ||||| || |||||| ||||||| ||  |   | ||| |  ||  | | ||||   | |  |||| |   | |   ||  ||||  | || |||     | |    |               
TTGAAGTTTTCCAGCAGCAACTTGAACTTGCTAAGGAGTTGAACAAGCCTGTTTCTGTTCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAAgtaagacatggagatttgttctcaaagtatgtttaagttgaaattct--tagtagattatttatagtatggtatccaccagttcctaacatagttcggatac

upper sequence: AT5G17570.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G114131_T02 (Zea mays), 5'ss of exon 4
TTACCGTCTTTCGTCAACAGCTTGAACTTGCAAAGGAATTGAAGAAACCTGCGTCAGTTCATTGTGTTCGTGCATTTGGGGATCTACTCGAGATATTAAAgtatgatcttcggctttatat-tctcatgtgttgctacaattatgtcaatgtgttcttatgatgtgttattgtaatatgcag--------------------
||   || || |  | |||||| ||||| || ||||||||| ||| |||||  || ||||||||||| || |||||||| ||||| || ||  |||| ||||| ||  | |   ||      ||||      |||  |||||  ||  |  |    ||   || ||    | ||    | |                     
TTGAAGTGTTCCAGCGACAGCTCGAACTAGCTAAGGAATTGGAGAGACCTGTTTCTGTTCATTGTGTGCGGGCATTTGGTGATCTTCTGGAAGTATTGAAgtaagacatgctatttagagcatctccaacaatgcctcaatttggt--acctcaaattgaaatatggagctctacgcagtaaaaactattccaacagtgcct

upper sequence: AT5G17570.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA16G26700.4 (Glycine max), 5'ss of exon 4
TTACCGTCTTTCGTCAACAGCTTGAACTTGCAAAGGAATTGAAGAAACCTGCGTCAGTTCATTGTGTTCGTGCATTTGGGGATCTACTCGAGATATTAAAgtatgatcttcggctttatattctcatgtgttgctacaattatgtcaatgtgtt--cttatgat-gtgttattgtaatatgcag------------------
||   || ||  | || ||||||||||||||||| || || || ||||| || || ||||||||||||||||| ||||| ||||| || ||| || | ||||||||   |  || || |  | ||   | || | |   |||  | ||    ||   | || || ||| |  || ||| |  |                   
TTGAAGTATTGAGGCAGCAGCTTGAACTTGCAAAAGAGTTAAACAAACCAGCATCTGTTCATTGTGTTCGTGCTTTTGGTGATCTTCTTGAGCTAATGAAgtatgaatat--gcattcttctttctcttctttcaattgttactttaaaagattgcttaataatagtgatgatggaatgtaaaattttcgaactgcaaaagt