Sequence
atgc intronic sequence ATGC exonic sequenceGAATCACTTGAAAAGATTGCTCCTACATGGATGAATGTCTCGCTGACAATGAAAAACGATCCAGAAACTGATAAGGCATTTGGATGGGTGCTGGAAATgttagcacaagaaacaagaatcttaaatcatgaattggctctccaccttttgaatcccatcattgttaactgactactttattcttctcttttctgtttgataag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G13500.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G13500.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os01g16600.1 (Oryza sativa), 5'ss of exon 4
GAATCACTTGAAAAGATTGCTCCTACATGGATGAATGTCTCGCTGACAATGAAAAACGATCCAGAAACTGATAAGGCATTTGGATGGGTGCTGGAAATgttagcacaagaaacaagaatcttaaatcatgaattggctctccaccttttgaatcccatcattgttaactgactactttattcttctcttttctgtttgataag
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ATACAACTTGAGAAGATTGCCCCTACATGGATGAATGTATCGATTCAAATGAAAGAAGATCAGGAGACAGATAAAGCTTTTGGATGGGTCTTGGAAATgtgagaattacgcttgtgtatattt--tcataatgcatttacttgcttgtta--------cattgtta--tgattccaggttcttgtttttacttgacttctag-
upper sequence: AT5G13500.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA13G26610.1 (Glycine max), 5'ss of exon 5
GAATCACTTGAAAAGATTGCTCCTACATGGATGAATGTCTCGCTGACAATGAAAAACGATCCAGAAACTGATAAGGCATTTGGATGGGTGCTGGAAATgttagcacaagaaacaagaatcttaaatcatgaattggctctccaccttttgaatcccatcattgttaactgactactttattcttctcttttctgtttga--taag
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GATTTGATTGCAAAGATTGCCCCCACATGGATGAATATTTCTTTGAAGATGAAAGAGGATCCAGAGACTGATAAAGCTTTTGGATGGGTGCTAGAAATgtatgtcttaccaaaaaatctgatagatatttttgttttagaagaggtattggaactgatagttttctgct--ttatgttaatgattttttttcttgtggagccaag
upper sequence: AT5G13500.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA15G37490.3 (Glycine max), 5'ss of exon 5
GAATCACTTGAAAAGATTGCTCCTACATGGATGAATGTCTCGCTGACAATGAAAAACGATCCAGAAACTGATAAGGCATTTGGATGGGTGCTGGAAATgt-tagcacaagaaacaagaatcttaaatcatgaattggctctccac---cttttgaatcccatcattgttaactgactactttattcttctcttttctgtttgataag-
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GATTTGATCGCAAAGATTGCCCCCACATGGATGAATATTTCTTTGAAGATGAAAGAGGACCCAGAGACTGATAAAGCTTTTGGATGGGTGCTAGAAATgtatgtcttaccaaacaa-----ctgatagatatttttgttctagaagaggtattggaactgataatt--tgatacattatgctaatggtttttttcttgtggaaccaag
upper sequence: AT5G13500.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv13s0084g00830.t01 (Vitis vinifera), 5'ss of exon 4
GAATCACTTGAAAAGATTGCTCCTACATGGATGAATGTCTCGCTGACAATGAAAAACGATCCAGAAACTGATAAGGCATTTGGATGGGTGCTGGAAATgttag---------cacaagaaacaagaatcttaaatcatgaattggctctccaccttttgaa--tcccatcattgttaactgactactttattcttctcttttctgtttgataag-
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GAGTTGTTGGAGAAGATTGCGCCTACATGGATGAATGTTTCTTTGAGAATGAAAGATGACCCAGAAACTGATAAAGTATTTGGATGGGTGCTAGAAATgtgagacaaaattccacatggaaacagccttttttttccctggtattccagctaattctagcacattttggtgttagtaacaaccttttttttttttttttcctttcttgaacaaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86075298|gb|DR371055.1|DR371055EST: ATGAAAAACGATCCAGAAACTGATAAGGCATTTGGATGGGTGCTGGAAAT GTACGGTTACGCAATTGCATCTGCTATACATGGGGTGCGTCACATACTTCG
genomic: ATGAAAAACGATCCAGAAACTGATAAGGCATTTGGATGGGTGCTGGAAATgttagcacaa ... gtttgataagGTACGGTTACGCAATTGCATCTGCTATACATGGGGTGCGTCACATACTTCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAATCACTTGAAAAGATTGCTCCTACATGGATGAATGTCTCGCTGACAATGAAAAACGATCCAGAAACTGATAAGGCATTTGGATGGGTGCTGGAAATgttagcacaagaaacaagaatcttaaatcatgaattggctctccaccttttgaatcccatcattgttaactgactactttattcttctcttttctgtttgataag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA