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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGATGATATTAGTGGATTCCACGCTAATACACATATTCCCATCGTCGTTGGATCCCAACAACGGTATGAAATCACTGGTGATCTACTCCATAAGgtatcgaagagtaaccaagaaaagtatgacatttttatcaaagaagatattggttctcttgattctgaaatctgcatttccag

Basic information

species Arabidopsis thaliana
transcript AT5G12950.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G12950.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv06s0004g01650.t01 (Vitis vinifera), 5'ss of exon 5
GCCGATGATATTAGTGGATTCCACGCTAATACACATATTCCCATCGTCGTTGGATCCCAACAACGGTATGAAATCACTGGTGATCTACTCCATAAGgta-----tcgaagagtaaccaagaaaagtat-gac----atttttatcaaagaagatattggttct-cttgattctgaaatctgcatttccag-------------
|| ||||| ||   |||||| || || ||||||||||| || || || |||||| | |||   |||||||||||||||||||||| |||  ||||||||       |  ||  ||    | | ||| | |||    ||  | | ||||||  |   || || | | ||||    |  | |   | |  |              
GCTGATGACATATCTGGATTTCATGCCAATACACATATCCCAATTGTTGTTGGAGCTCAAATGCGGTATGAAATCACTGGTGATCCACTTTATAAGgtaaattgctgtggataaattctggacagtcttgactgcaatcgtcaacaaagacaaagatgtttgtgcctgatcacaagttattgttctataatattgtgtgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125131109|gb|EL173927.1|EL173927
EST:     GATCCCAACAACGGTATGAAATCACTGGTGATCTACTCCATAAG                         GAAATCTCGATGTTCTTTATGGACATTTTTAA
genomic: GATCCCAACAACGGTATGAAATCACTGGTGATCTACTCCATAAGgtatcgaaga ... gcatttccagGAAATCTCGATGTTCTTTATGGACATTTTTAA