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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGCTGAAAATGGAGATGCAGTATTCGAAGGACAGAAAAGAATGATTGAACTGGGCATTACAGGTCCAGAGGGTCATGCTCTTTCAAGGCCTCCTGTGgtaatttgcgtcaagcattttccattttattatactgcctcctagattttttcttttctcctatatctgctcttgcctctgtaaagctttgttgaagctactaaaacaagatccttgtttgacaatgtcag

Basic information

species Arabidopsis thaliana
transcript AT5G12200.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G12200.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA15G06100.1 (Glycine max), 5'ss of exon 5
TCATGCTGAAAATGGAGATGCAGTATTCGAAGGACAGAAAAGAATGATTGAACTGGGCATTACAGGTCCAGAGGGTCATGCTCTTTCAAGGCCTCCTGTGgtaatttgcgtcaagcattttccatttta----ttatactgcctcctagattttttcttttctcctatatctgctcttgcctctgtaaagctttgttgaagctactaaaacaagatccttgtttgacaatgtcag
 ||||| |||||||||||||| || | |||||| ||| ||| |||||| ||||| || || || ||||| ||||| |||||||||||| ||||| | ||||||| ||   |||    | |||  || ||     | ||| |  |  | || |     |  |  || |  ||   | |||  ||   |   |||  || |   |||                              
CCATGCAGAAAATGGAGATGCTGTGTACGAAGGTCAGGAAAAAATGATAGAACTTGGAATAACTGGTCCTGAGGGACATGCTCTTTCACGGCCTGCAGTGgtaaattc--tcatatttgttcttttgtaaagaatttacagaataatggaatgaaagtactggcc-acttccagttttgtttcatcat--cttcatt-atcttacc-----------------------------

upper sequence: AT5G12200.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA14G04030.1 (Glycine max), 5'ss of exon 5
TCATGCTGAAAATGGAGATGCAGTATTCGAAGGACAGAAAAGAATGATTGAACTGGGCATTACAGGTCCAGAGGGTCATGCTCTTTCAAGGCCTCCTGTGgtaatttgcgtcaagcattttccattttattatactgcctcctagattttttcttttc--tcctatatctgctcttgcctctgtaaagctttgttgaagctactaaaacaagatccttgtttgacaatgtcag
 ||||| |||||||||||||| || |  ||||| ||    | |||||| ||||| || || || ||||| ||||| |||||||||||||||||| | ||||||||||      |  ||| | | ||||| || |     | |   ||  |    |     |  |  |  |  | |||  ||  |  | |||  | |  |   || |                           
CCATGCAGAAAATGGAGATGCTGTGTATGAAGGGCAACGGAAAATGATAGAACTTGGAATAACTGGTCCTGAGGGGCATGCTCTTTCAAGGCCTGCAGTGgtaattt---ctcaatattgttc-ttttagtaaagaatttgcagaataatggaatgaaaatattggacatttttttgtttccttccatcttcttcgttgt--ctga---------------------------

upper sequence: AT5G12200.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv06s0009g02790.t01 (Vitis vinifera), 5'ss of exon 5
TCATGCTGAAAATGGAGATGCAGTATTCGAAGGACAGAAAAGAATGATTGAACTGGGCATTACAGGTCCAGAGGGTCATGCTCTTTCAAGGCCTCCTGTGgtaatttgcgtcaagcattttccattttattatactgcctcctagattttttcttttctcctatatctgctcttgcctctgtaaagctttgttgaagctactaaaacaagatccttgtttgacaatgtcag
 |||||||||||||||||||| ||||| ||||| |||||||||||||| ||||| |||||||| ||||||||||| ||||| ||||||||||| || |||||||||  | | ||  || | |  ||||  | |    |    | |   | |  | ||   || |||    | || | ||  |||| || | ||  | ||  |                             
ACATGCTGAAAATGGAGATGCTGTATTTGAAGGGCAGAAAAGAATGATAGAACTTGGCATTACTGGTCCAGAGGGACATGCACTTTCAAGGCCACCCGTGgtaatt--ccttaaagatgtccattttttctttgaccctgtattgccctctggtgttgcact-tatagtattttacatcattaaacctatttttgaacttttg----------------------------