1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CCATGTAACTGGTGTGAAGACGAATGGAACTAAAAACTTCATAGTGATTGATGGAAGTATGGCTGAGCTTATCCGTCCCAGTCTTTATGATGCCTATCAGgtaaaacaaatatacttttcacaacagcatctgcagattctagtccctttgaactatagctaaacatcctcttgtttttgttttttaacgcaaaag
species | Arabidopsis thaliana |
transcript | AT5G11880.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCTTATCCGTCCCAGTCTTTATGATGCCTATCAG CATATTGAGTTGGTCTCTCCTACACCGCCTGAAGCAGAGGTTACCAAATT-EST: gi|86082712|gb|DR378471.1|DR378471
genomic: GCTTATCCGTCCCAGTCTTTATGATGCCTATCAGgtaaaacaaa ... aacgcaaaagCATATTGAGTTGGTCTCTCCTACACCGCCTGAAGCAGAGGTTACCAAATTC
EST: ATGGAAGTATGGCTGAGCTTATCCGTCCCAGTCTTTATGATGCCTATCAG CATATTGAGTTGGTCTCTCCTACACCGCCTGAAGCAGAGGTTACCAAATTCEST: gi|164156187|gb|ES105063.1|ES105063
genomic: ATGGAAGTATGGCTGAGCTTATCCGTCCCAGTCTTTATGATGCCTATCAGgtaaaacaaa ... aacgcaaaagCATATTGAGTTGGTCTCTCCTACACCGCCTGAAGCAGAGGTTACCAAATTC
EST: GCTTATCCGTCCCAGTCTTTATGATGCCTATCAG CATATTGAGTTGGTCTCTCCTACACCGCCTGAAGCAGAGGTTACCAAATTC
genomic: GCTTATCCGTCCCAGTCTTTATGATGCCTATCAGgtaaaacaaa ... aacgcaaaagCATATTGAGTTGGTCTCTCCTACACCGCCTGAAGCAGAGGTTACCAAATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATGTAACTGGTGTGAAGACGAATGGAACTAAAAACTTCATAGTGATTGATGGAAGTATGGCTGAGCTTATCCGTCCCAGTCTTTATGATGCCTATCAGgtaaaacaaatatacttttcacaacagcatctgcagattctagtccctttgaactatagctaaacatcctcttgtttttgttttttaacgcaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT