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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGAGAGAGAAGCAGTGAATGCCGCAGAAAGGGCAGAGAGGAAACAACATCTGAGGGAGAAGgtcagtgtctgtttttggtcgttatcatcttaaacgtctttgattagggttttgactgaaatcctcggttgtttctggattttgcagaag

Basic information

species Arabidopsis thaliana
transcript AT5G11500.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86045057|gb|DR340812.1|DR340812
EST:     CAGTGAATGCCGCAGAAAGGGCAGAGAGGAAACAACATCTGAGGGAGAAG                         AAGAAACGTGAAGAGATAGATAGGCTTGAGAAGGAGAGG
genomic: CAGTGAATGCCGCAGAAAGGGCAGAGAGGAAACAACATCTGAGGGAGAAGgtcagtgtct ... tttgcagaagAA-A--CGTGAAGAGATAGATAGGCTTGAGAAGGAGAGG
EST: gi|86045138|gb|DR340893.1|DR340893
EST:     CAGTGAATGCCGCAGAAAGGGCAGAGAGGGAACAACATCTGAGGGAGAAG                         AAGAAACGTGAAGAGATAGATAGGCTTGAGAAGGAGAGGCAATCAGAG
genomic: CAGTGAATGCCGCAGAAAGGGCAGAGAGGAAACAACATCTGAGGGAGAAGgtcagtgtct ... tttgcagaagAA-A--CGTGAAGAGATAGATAGGCTTGAGAAGGAGAGGCAATCAGAG
EST: gi|86045092|gb|DR340847.1|DR340847
EST:     CAGTGAATGCCGCAGAAAGGGCAGAGAGGAAACAACATCTGAGGGAGAAG                         AAGAAACGTGAAGAGATAGATAGG
genomic: CAGTGAATGCCGCAGAAAGGGCAGAGAGGAAACAACATCTGAGGGAGAAGgtcagtgtct ... tttgcagaagAA-A--CGTGAAGAGATAGATAGG
EST: gi|86045107|gb|DR340862.1|DR340862
EST:     AGTGAATGCCGCAAAAAGGGCAGAGAGGGAAACA-CATCTGAGGGAGAAG                         AGAAACGTGAAGAGATAGATAGGCTTGAGAAGGAGAGGCA
genomic: AGTGAATGCCGCAGAAAGGGCAGAGAGG-AAACAACATCTGAGGGAGAAGgtcagtgtct ... tttgcagaagA-AA-CGTGAAGAGATAGATAGGCTTGAGAAGGAGAGGCA
EST: gi|86045106|gb|DR340861.1|DR340861
EST:     CAGTGAATGCCGCAGAAAGGGCAGAGAGGAAACAACATCTGAGGGAGAAG                         AAGAAACGTGAAGAGATAGATAGGCTTGAGAAGGAGAGGCAATCAGAGATG
genomic: CAGTGAATGCCGCAGAAAGGGCAGAGAGGAAACAACATCTGAGGGAGAAGgtcagtgtct ... tttgcagaagAA-A--CGTGAAGAGATAGATAGGCTTGAGAAGGAGAGGCAATCAGAGATG
EST: gi|86045093|gb|DR340848.1|DR340848
EST:     CAGTGAATGCCGCAGAAAGGGCAGAGAGGAAACAACATCTGAGGGAGAAG                         AAGAAACGTGAAGAGATAGATAGGCTTGAGAAGGAGAGGCAATCAGAGATG
genomic: CAGTGAATGCCGCAGAAAGGGCAGAGAGGAAACAACATCTGAGGGAGAAGgtcagtgtct ... tttgcagaagAA-A--CGTGAAGAGATAGATAGGCTTGAGAAGGAGAGGCAATCAGAGATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGAGAGAGAAGCAGTGAATGCCGCAGAAAGGGCAGAGAGGAAACAACATCTGAGGGAGAAGgtcagtgtctgtttttggtcgttatcatcttaaacgtctttgattagggttttgactgaaatcctcggttgtttctggattttgcagaag

- - - - - - - - - - - - - - - - -  GAGAGG
- - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA