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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGTGTCGATTGAGGAAGGTGATAACAAAGCTCGTGATTATGGAGTAATATTCATTGAGACCAGTGCAAAAGCAGGATTTAACATCAAGgtgagagatgcaactatgctctcattactcgtttaagatcttgagatttcttggaataacgcttggctttcttgttctggtgttttggaaacttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G10260.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G10260.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv00s0665g00040.t01 (Vitis vinifera), 5'ss of exon 5
GCAAGTGTCGATTGAGGAAGGTGATAACAAAGCTCGTGATTATGGAGTAATATTCATTGAGACCAGTGCAAAAGCAGGATTTAACATCAAGgtgagagatgcaactatgctctcattactcgtttaagatcttgagatttcttggaataacgcttggc--tttcttgttctgg--tgttttggaaacttgcag
||||||||| || ||||||||||||| |||| ||||||||| |||||| || ||||| || |||||||| ||||||||||| || ||||||||     | |    || ||     ||  || ||| ||  ||||   ||   ||  |  |||    |   | || | |  ||   |||     ||  ||||  
GCAAGTGTCAATAGAGGAAGGTGATACCAAATCTCGTGATTTTGGAGTCATGTTCATAGAAACCAGTGCTAAAGCAGGATTCAATATCAAGgtagagaaaggttttaagcctatgtttttctttttagtccttgcacttgactgtgagcacgaggagtgatctcctatcttgacttgtgacacaacattgc--

upper sequence: AT5G10260.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: PP1S288_43V6.1 (Physcomitrella patens), 5'ss of exon 5
GCAAGTGTCGATTGAGGAAGGTGATAACAAAGCTCGTGATTATGGAGTAATATTCATTGAGACCAGTGCAAAAGCAGGATTTAACATCAAGgtgagagatgcaactatgctctcattactcgtttaagatcttgag---atttcttggaataacgctt---ggctttcttgttctggtgttttggaaacttgcag
|||||| ||  |||| |||||||| | |||||| || ||   | | | | |  | |||||||||||||| ||||| |||||||| |||||||  ||   ||||  |    ||    ||     |  | || | |||   |   ||| |||       |   |  |||       |  |||     |  ||| | |
GCAAGTCTCAGTTGAAGAAGGTGAAACCAAAGCCCGGGAGCTTAGCGCACTCATGATTGAGACCAGTGCTAAAGCGGGATTTAATATCAAGgccag---tgcattttccttccttctaaggtctccaaatgtagagtgaaccacttagaactgtctatcaagaattttcctacataatgtac-acattctttcgg

upper sequence: AT5G10260.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: PP1S39_147V6.2 (Physcomitrella patens), 5'ss of exon 6
GCAAGTGTCGATTGAGGAAGGTGATAACAAAGCTCGTGATTATGGAGTAATATTCATTGAGACCAGTGCAAAAGCAGGATTTAACATCAAGgtgag---------agatgcaactatgctctcattactcgtttaagatcttgaga---tttcttggaat-----aacgcttggctttcttgttctggtgttttggaaacttgcag-------------------------------------------------------------------------------------
 |||||||| ||||| ||||||||    ||||||   || | |||||| || ||||||||||| ||| |||||||||| |||||||||||||| |           | |  |||| ||   |  | ||   ||| | ||   |||    |   ||  |||     |     |||  || |   |||| ||       |||| ||                                                                                       
TCAAGTGTCTATTGAAGAAGGTGACGCTAAAGCTAAGGAATTTGGAGTCATGTTCATTGAGACAAGTTCAAAAGCAGGTTTTAACATCAAGgtaaatctctttccggcttgaactgtgtatttgt-acagattttatattccgaggaggtaatttacaatttttgagtagatggaattgtgcatctgatgcaagtttaactcgctagcttgtctttctttgggcataaaaatgagctaggtctgctcagtgtaattccaccaggcatctcattttggaacatcacatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125311876|gb|EL325961.1|EL325961
EST:     ATGGAGTAATATTCATTGAGACCAGTGCAAAAGCAGGATTTAACATCAAG                         CCACTTTTTCGC
genomic: ATGGAGTAATATTCATTGAGACCAGTGCAAAAGCAGGATTTAACATCAAGgtgagagatg ... aaacttgcagCCACTTTTTCGC