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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAGAGGTGGCCAACTATGGGGAACAGATATATACACAGACGATTCCGATCTTGTTGCTGgtatgtaccctaatgaatcttatgcaattattatctttgtttggcccgaacatgacattgattctggtctacctgtcatctag

Basic information

species Arabidopsis thaliana
transcript AT5G08450.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G08450.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G464000_T02 (Zea mays), 5'ss of exon 4
GTAAGAGGTGGCCAACTATGGGGAACAGATATATACACAGACGATTCCGATCTTGTTGCTGgtatgtaccctaatgaatcttatgcaattattatctttgtttggcccgaacatgacattgattctggtctacctgtcatctag
||||  ||||  ||||| ||||||||||||||||| ||| | ||||| |||||||| |||||||  | || |  ||     | | | |  ||| |      ||||        |    |   ||||  | | | | ||   |||
GTAAAGGGTGCTCAACTTTGGGGAACAGATATATATACAAATGATTCAGATCTTGTGGCTGgtagattccttcttg----ctgttccaaaattctaaacagttggggaagtttttttttaacttctaatgtgcgtttctgttag

upper sequence: AT5G08450.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA10G31960.1 (Glycine max), 5'ss of exon 5
GTAAGAGGTGGCCAACTATGGGGAACAGATATATACACAGACGATTCCGATCTTGTTGCTGgtatgtaccct-aatgaatcttatgcaattattatctttgtttggcccgaacatgacattgattctggtct----acctgtcatctag--------------
|| ||||||||||| || ||||| || ||| | |||||| ||||||| ||||||||||||||||| |  | | ||  ||   |     |   || ||||      | | |  |||    |||    | || |    |  ||  || | |              
GTCAGAGGTGGCCAGCTTTGGGGGACCGATGTGTACACATACGATTCAGATCTTGTTGCTGgtatatgtcttcaaaaaaagatgcattagccttttcttataaatgacagttcatatatttggcgatagtatggataattgcaattttgttgcacctgcacag

upper sequence: AT5G08450.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA20G35720.1 (Glycine max), 5'ss of exon 4
GTAAGAGGTGGCCAACTATGGGGAACAGATATATACACAGACGATTCCGATCTTGTTGCTGgtatgtaccctaatgaatcttatgcaattattatctttgtttg--gcccgaacatgacattgattctggtct----acctgtcatctag--------------
|| ||||||||||| || ||||| || ||| | |||||| ||||||| ||||||||||||||||| |  | | |  ||    ||||| ||    | | |  |    | | |  |||    |||    | || |    |  ||  || | |              
GTCAGAGGTGGCCAGCTTTGGGGGACCGATGTGTACACATACGATTCAGATCTTGTTGCTGgtatatgtctttacaaaaag-atgcatttgccttttcttataaatgacaggtcatatatttggcgatagtatggataattgcaattttgttgcacctgcacag

upper sequence: AT5G08450.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv07s0130g00270.t01 (Vitis vinifera), 5'ss of exon 4
GTAAGAGGTGGCCAACTATGGGGAACAGATATATACACAGACGATTCCGATCTTGTTGCTGgtatgtaccctaatgaa------tcttatgcaattattatctttgt------------ttggc------ccgaacatgacattgattctggtctacctgtcatctag
|| ||||| |||||| ||||||| |||||||||||||| || || || |||||||||||||||||||    | |  ||      |||   ||   || |   |||||            || |       ||  |  | | ||| || |||   ||  |||| |  ||
GTCAGAGGCGGCCAATTATGGGGGACAGATATATACACTGATGACTCAGATCTTGTTGCTGgtatgtggtgttacaaaggagagtctagagcttatactgcatttgtagatgatagaacttagtggtatgccataacttatattaatgctgcattat-tgtctttcag

upper sequence: AT5G08450.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: EFJ10097 (Selaginella moellendorffii), 5'ss of exon 3
GTAAGAGGTGGCCAACTATGGGGAACAGATATATACACAGACGATTCCGATCTTGTTGCTGgtatgtaccctaatgaatcttatgcaattattatctttgtttggcccgaacatgacattgattctggtctacctgtcatctag
||  | ||  ||||||| ||||||||||| || ||||| || |||||||| || |||||||||| ||           ||||  |           |||||   |   |||  |||  |   || ||||   |  |        
GTTCGTGGGAGCCAACTTTGGGGAACAGACATCTACACCGAGGATTCCGACCTCGTTGCTGgtaagtttttc------tcttccgtg---------tttgtgcaga--gaagctgaggtaacttttggtgctcacgcag-----

upper sequence: AT5G08450.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: EFJ34895 (Selaginella moellendorffii), 5'ss of exon 3
GTAAGAGGTGGCCAACTATGGGGAACAGATATATACACAGACGATTCCGATCTTGTTGCTGgtatgtaccctaatgaatcttatgcaattat-tatctttgtttggcccgaacatgacattgattctggtctacctgtcatctag
||  | ||  ||||||| ||||||||||| || ||||| || |||||||| || |||||||||| ||           ||||  |   ||||  |     | |  |        ||    | |  | |                 
GTTCGTGGGAGCCAACTTTGGGGAACAGACATCTACACCGAGGATTCCGACCTCGTTGCTGgtaagtttttc------tcttccgtgtttatgcagagaagctgaggtaacgtttggtgctcacgcag-----------------