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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAAAAAGAGACTGGTTTTGTTGGACTCAAGAACCAAGGTGCAACATGCTACATGAATTCTCTCCTACAGACACTATACCACATACCTTACTTCAGAAAGgtaagatatattcttgttttttccttcagtttgttaaattccatgggttctcattgaatccttgaccggacaactgaattttgcatgttgcttgtag

Basic information

species Arabidopsis thaliana
transcript AT5G06600.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G06600.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os11g36470.1 (Oryza sativa), 5'ss of exon 1
TAAAAAAGAGACTGGTTTTGTTGGACTCAAGAACCAAGGTGCAACATGCTACATGAATTCTCTCCTACAGACACTATACCACATACCTTACTTCAGAAAGgtaagatatattcttgttttttccttcagtttgttaaattccatgggttctcattgaatccttgaccggacaactgaattttgcatgttgcttgtag
 |||||||| || ||||  ||||| || ||||||||||| || || || |||||||| ||||| ||||||||||||||||| ||||| |||||||| |||||  || ||   | ||  |  |  |||||        |||| |         ||||  |||   ||      ||| | ||    || || |      
AAAAAAAGAAACAGGTTACGTTGGCCTGAAGAACCAAGGAGCTACCTGTTACATGAACTCTCTACTACAGACACTATACCATATACCATACTTCAGGAAGgtgtgagat---catgcatcataattcagagc-----attctaga-----ctattgtttccagaactaattgactaacttcattattttacccag--

upper sequence: AT5G06600.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os01g56490.1 (Oryza sativa), 5'ss of exon 5
TAAAAAAGAGACTGGTTTTGTTGGACTCAAGAACCAAGGTGCAACATGCTACATGAATTCTCTCCTACAGACACTATACCACATACCTTACTTCAGAAAGgtaagatatattcttgttttttccttcagtttgttaaattccatgggttctcattgaatccttgaccggacaactgaattttgcatgttgcttgtag
 ||||| |||||||| | |||||| || ||||| ||||| || |||||||||||||||||||| || ||||| || ||||| || || |||||| ||||||| ||   ||   ||||   |||  | |  |     ||| | |||       ||   |  ||    | || ||    |||||               
CAAAAAGGAGACTGGCTATGTTGGCCTTAAGAATCAAGGGGCTACATGCTACATGAATTCTCTTCTTCAGACGCTTTACCATATTCCGTACTTCCGAAAGgtgaggc-taaatttgtaaattctcttaaat----gaatcctatg-------atgcgaggctgatacagagaatgatattttag-------------

upper sequence: AT5G06600.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G014805_T01 (Zea mays), 5'ss of exon 5
TAAAAAAGAGACTGGTTTTGTTGGACTCAAGAACCAAGGTGCAACATGCTACATGAATTCTCTCCTACAGACACTATACCACATACCTTACTTCAGAAAGgtaagatatattcttgttttttccttca-gtttgttaaattccatgggttctcattgaatccttgaccggacaactgaattttgcatgttgcttgtag
 |||||||| || |||||||| || || ||||| |||||||| || || || |||||||||||||| || ||  ||||||| | ||| || || |||||||| | ||  ||  ||||| | | || || |||| |  ||   | ||  ||    ||||| | || |  | |      |  ||| |||           
GAAAAAAGAAACAGGTTTTGTAGGTCTTAAGAATCAAGGTGCTACCTGTTATATGAATTCTCTCCTTCAAACGTTATACCATACACCATATTTTAGAAAGgtgaaatcaatcattgttctgttctacatgtttctctaagcacctgaatt----ttgaaccatttattgaa------atgttttcatag---------

upper sequence: AT5G06600.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv08s0032g00600.t01 (Vitis vinifera), 5'ss of exon 5
TAAAAAAGAGACTGGTTTTGTTGGACTCAAGAACCAAGGTGCAACATGCTACATGAATTCTCTCCTACAGACACTATACCACATACCTTACTTCAGAAAGgtaagatatattcttgttttttccttcagtttgttaaattccatgggttctcattgaatccttgaccggaca-actgaattttgcatgttgcttgtag-
 ||||| |||||||||||||||||||| ||||||||||| || || || ||||||||||||||| |||| || || ||||| || ||||| ||||||||||| ||   |||  |   |||||| |   |||| |||   |  ||      ||| ||| |   | |  ||| | ||   |||||| |   ||  |||   
AAAAAAGGAGACTGGTTTTGTTGGACTGAAGAACCAAGGGGCTACTTGTTACATGAATTCTCTCTTACAAACTCTCTACCATATTCCTTATTTCAGAAAGgttaggagtatcttatatttttcttattgtttattattatttat-----ttcaatgagtatctaaaaggaaataccttattttggactatgtatgtcag

upper sequence: AT5G06600.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: PP1S42_181V6.1 (Physcomitrella patens), 5'ss of exon 5
TAAAAAAGAGACTGGTTTTGTTGGACTCAAGAACCAAGGTGCAACATGCTACATGAATTCTCTCCTACAGACACTATACCACATACCTTACTTCAGAAAGgtaagatatattcttgttttttcct---tcagtttgttaaattccatgggttctcattgaatccttgaccggacaactgaattttgcatgttgcttgtag----
 || || || || || ||||||||  | ||||| ||||| || ||||||||||||||||||||||| |||||| | || ||  | ||||||||| | |||||    ||| ||| |||   | |     |||   |  |   |   |    || |||   | ||  |  | |||     | ||| |   |       |||     
GAAGAAGGAAACAGGATTTGTTGGGTTAAAGAATCAAGGAGCTACATGCTACATGAATTCTCTCCTCCAGACATTGTATCATCTGCCTTACTTCCGGAAGgt----tattttcctgtcaatacagaaatcatggttgtggttagaaccttttttcagcaactcagtttcaggagtctcggattctctttcggttcagtacttta

upper sequence: AT5G06600.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: PP1S123_138V6.1 (Physcomitrella patens), 5'ss of exon 5
TAAAAAAGAGACTGGTTTTGTTGGACTCAAGAACCAAGGTGCAACATGCTACATGAATTCTCTCCTACAGACACTATACCACATACCTTACTTCAGAAAGgtaagatatattcttgttttttccttcagtttgttaaattccat---gggttctcattgaatccttgaccggacaactgaattttgcatgttgcttgtag-----
 || |||||||| |||| ||||||| | ||||| ||||| || ||||||||||||||||||||||| |||||  | || ||| | || |||||  | |||||    ||| | | ||   |  |      |||  | |||| |||   |   |    |  ||| |    || |    ||  ||   |  |   | || | |     
GAAGAAAGAGACAGGTTATGTTGGATTGAAGAATCAAGGAGCGACATGCTACATGAATTCTCTCCTCCAGACGTTGTATCACCTGCCCTACTTTCGGAAGgt----tatttccctgccatcacagatcattt-ctgaattacattctgcaattcagtgcaattcagtgccaggaggctctatccagttttcggtttattgtgtct

upper sequence: AT5G06600.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: EFJ13603 (Selaginella moellendorffii), 5'ss of exon 5
TAAAAAAGAGACTGGTTTTGTTGGACTCAAGAACCAAGGTGCAACATGCTACATGAATTCTCTCCTACAGACACTATACCACATACCTTACTTCAGAAAGgtaagatatattcttgttttttccttcagtttgttaaattccatgggttctcattgaatccttgaccggacaactgaattttgcatgttgcttgtag
 || || ||||||||||| |||||  | ||||| || ||||| || ||||||||||| || || || ||||| || |||||||| ||||||||| | |||||||    |||| |   || | |||| |   ||||   |  ||  |       || | | ||||       || | |                    
GAAGAAGGAGACTGGTTTCGTTGGGTTGAAGAATCAGGGTGCGACCTGCTACATGAACTCACTACTTCAGACGCTTTACCACATTCCTTACTTCCGTAAGgtaa---ctattatctcttatcccttga--ctgttcggtctcacag-------ttaagttcttg------taattcag-------------------

upper sequence: AT5G06600.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: EFJ19227 (Selaginella moellendorffii), 5'ss of exon 5
TAAAAAAGAGACTGGTTTTGTTGGACTCAAGAACCAAGGTGCAACATGCTACATGAATTCTCTCCTACAGACACTATACCACATACCTTACTTCAGAAAGgtaagatatattcttgttttttccttcagtttgttaaattccatgggttctcattgaatccttgaccggacaactgaattttgcatgttgcttgtag
 || || |||||||||||||||||  | ||||| || ||||| || ||||||||||| || || || ||||| || |||||||| ||||||||| | |||||||    |||| |   || | |||| |   ||||   |  ||  |       || | | ||||      ||                         
GAAGAAGGAGACTGGTTTTGTTGGGTTGAAGAATCAGGGTGCGACCTGCTACATGAACTCACTGCTTCAGACGCTTTACCACATTCCTTACTTCCGTAAGgtaa---ctattatctcttatcccttga--ctgttcggtctcacag-------ttaagttcttg-tgattcag------------------------