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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAATTCGTAAAATCTTGCAAGAGGAGCTTGGGAGACCCATTGAAAGTGTATACGAATATGTTGACCCTACGCCAATTGCATCAGCCTCAATAGCACAAgtgtgttcttctacttgtacttcaatgatcaaaattcattttgttcatgtactcttcttctgcttaagggaatcatcatgaccag

Basic information

species Arabidopsis thaliana
transcript AT5G05200.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G05200.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv13s0067g03210.t01 (Vitis vinifera), 5'ss of exon 5
AGAAATTCGTAAAATCTTGCAAGAGGAGCTTGGGAGACCCATTGAAAGTGTATACGAATATGTTGACCCTACGCCAATTGCATCAGCCTCAATAGCACAAgtgtgttct--tctacttgtacttcaatgatcaaaattcattttgttcatgtactcttcttctgcttaagggaatcatcatg-accag------
||| || |  | | ||||||  || ||  | |||||||| || || ||||| || |||||||||||||| || |||||||| || |||||||| ||||| || | | ||   |  ||  |  ||       | |||||  | |  ||  |||  |      |   | |  |||||| | |      |       
AGATATCCAAAGAGTCTTGCGTGAAGAATTAGGGAGACCAATAGATAGTGTTTATGAATATGTTGACCCGACACCAATTGCTTCTGCCTCAATTGCACAGgtttatactatccccctcttttttttgctccccaaatttttatcattt-tgtttttcatgacgaatgattggaatcctgaaatgttaactccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47832248|gb|CK121932.1|CK121932
EST:     TATACGAATATGTTGACCCTACGCCAATTGCATCAGCCTCAATAGCACAA                         GTCCATGGTGCAAGGCTTCGAGGCTCCCAAGAGGATGTTGTGATTAAAGTC
genomic: TATACGAATATGTTGACCCTACGCCAATTGCATCAGCCTCAATAGCACAAgtgtgttctt ... tcatgaccagGTCCATGGTGCAAGGCTTCGAGGCTCCCAAGAGGATGTTGTGATTAAAGTC