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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTTATTGCTCGTCCATGGACACTGGAATTACCAAAGGATGGGTTACATGATACTATATAATTTCTATAGAAATGCAGTTTTTGTTCTAATTTTATTTTGgtgagttaccatcttactatgttttgtactattccgtcttaaaacaatgaccgcagactaacactcaccaatttcacgcag

Basic information

species Arabidopsis thaliana
transcript AT5G04930.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G04930.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G407825_T01 (Zea mays), 5'ss of exon 5
CGTTATTGCTCGTCCATGGACACTGGAATTACCAAAGGATGGGTTACATGATACTATATAATTTCTATAGAAATGCAGTTTTTGTTCTAATTTTATTTTGgtgagttaccatcttactatgttttgtact-----attccgtct-taaaacaatgac-cgcagactaacactcacca-atttcacgcag
|  | ||| | || ||||| || ||||||||||| |||||||  |||||||| |||||||| ||||| ||||||||   ||||||  |  |  |||| |||| ||    ||  || | ||  ||  ||||      ||| ||||  | |||||  ||   || | |||  | |   | ||||||     
CTCTGTTGTTGGTTCATGGCCATTGGAATTACCAGAGGATGGCCTACATGATCCTATATAACTTCTACAGAAATGCTACTTTTGTCTTTGTGCTATTCTGgtaag----cacgttgccataattgatacttattggttcagtctgcataacaaatacgtacatattaattcgctgaacatttcag----

upper sequence: AT5G04930.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA04G16040.1 (Glycine max), 5'ss of exon 5
CGTTATTGCTCGTCCATGGACACTGGAATTACCAAAGGATGGGTTACATGATACTATATAATTTCTATAGAAATGCAGTTTTTGTTCTAATTTTATTTTGgtgagttaccatcttacta-tgttt-tgtactattccgtcttaaaacaatgaccgcagactaacactcaccaatttcacgcag-------------------
|  | ||  |  | ||||| ||||||||||||||| || | ||||| ||||||||||| ||||| || |||||||| ||  |||||||  |  ||||||||| |||||  |||  || | ||| | |||      | |  || |    |  ||  || | ||  || ||| || |||||                       
CTCTTTTATTGATACATGGTCACTGGAATTACCAACGGCTCGGTTATATGATACTATACAATTTTTACAGAAATGCTGTCCTTGTTCTTGTCCTATTTTGgtaagttataatccaacaaatgtatgtgtgtgtagctgcttttatcatacaacttcaaatta-tac-cacaaacttcaccttcaaaagtttttgttattggg

upper sequence: AT5G04930.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G24580.1 (Glycine max), 5'ss of exon 6
CGTTATTGCTCGTCCATGGACACTGGAATTACCAAAGGATGGGTTACATGATACTATATAATTTCTATAGAAATGCAGTTTTTGTTCTAATTTTATTTTGgtgagttaccatctt---actatgttttgtactattccgtcttaaaacaatgaccgcagactaacac-tcaccaatttcacgcag----------------
|  | ||  |  | ||||| || |||||||||||| |  |||||||||||||| |||| || ||||| ||||||||  | ||||||||  |  ||||||||| |||||  ||      | | | | | ||   || |  ||||     |||  | | |    || |   ||| ||  |  |                    
CTCTCTTATTAATACATGGGCATTGGAATTACCAACGACTGGGTTACATGATAATATACAACTTCTACAGAAATGCTATCTTTGTTCTTGTCCTATTTTGgtaagttataattcagaaaatgtatatagttagatgctttcttcgtgtaatt-ctgaatttgaatatgccacgaaaatagccttaaacaatttttttctta

upper sequence: AT5G04930.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv13s0047g01210.t01 (Vitis vinifera), 5'ss of exon 5
CGTTATTGCTCGTCCATGGACACTGGAATTACCAAAGGATGGGTTACATGATACTATATAATTTCTATAGAAATGCAGTTTTTGTTCTAATTTTATTTTGgtgagttaccatcttactatgttttgtactattccgtcttaaaacaatgaccgcagactaacactcaccaatttcacgcag--------------------
|  | ||  | || ||||| || |||||||||||  ||||||| ||||||||||| || ||||| || || ||||| || ||||||||  | || || |||||||||    | ||  | |  ||||| |   | | |   |   |   ||   || | ||  | |       | || | ||                    
CACTTTTATTAGTTCATGGTCATTGGAATTACCAGCGGATGGGCTACATGATACTGTACAATTTTTACAGGAATGCTGTGTTTGTTCTTGTCTTGTTCTGgtgagttcatttttttatttcatttgttcagattctttcaatgtcctagaggacataatag-atttgatgtgtgcaagaagaagatgaaaataaatagttc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125199777|gb|EL214731.1|EL214731
EST:     ATACTATATAATTTCTATAGAAATGCAGTTTTTGTTCTAATTTTATTTTG                         GTACGTTTTGTTTACTTGCTACACCTTGACAACTGCCATCACAGAATGGAG
genomic: ATACTATATAATTTCTATAGAAATGCAGTTTTTGTTCTAATTTTATTTTGgtgagttacc ... tttcacgcagGTACGTTTTGTTTACTTGCTACACCTTGACAACTGCCATCACAGAATGGAG