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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACACTGGCCGGAAAGTGGAAGATCCTGACTTGTTGGAACAAATCCGATTAACAATCATCAACAATCTCTTGAAATACCATCCGgtctgcctacagttttctttatctctttaccgtaatcacattcacattcaaagaggcttgcatgcagctgtttttttttttttgaacattgcctttggttgttttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G04740.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86079610|gb|DR375367.1|DR375367
EST:     ACAATCATCAACAATCTCTTGAAATACCATCCG                         GAATGCAGTGAGCAACTTGCAATGGGTGAGACTTTTGGAATAAAGGCTCCC
genomic: ACAATCATCAACAATCTCTTGAAATACCATCCGgtctgcctac ... tgttttgcagGAATGCAGTGAGCAACTTGCAATGGGTGAGACTTTTGGAATAAAGGCTCCC
EST: gi|116403963|gb|EG446555.1|EG446555
EST:     TGGAACAAATCCGATTAACAATCATCAACAATCTCTTGAAATACCATCCG                         GAATGCAGTGAGCAACTTGCAATGGGTGAGACTTTTGGAATAAAGGCTCCC
genomic: TGGAACAAATCCGATTAACAATCATCAACAATCTCTTGAAATACCATCCGgtctgcctac ... tgttttgcagGAATGCAGTGAGCAACTTGCAATGGGTGAGACTTTTGGAATAAAGGCTCCC
EST: gi|86082088|gb|DR377847.1|DR377847
EST:     ACAATCATCAACAATCTCTTGAAATACCATCCG                         GAATGCAGTGAGCAACTTGCAATGGGTGAGACTTTTGGAATAAAGGCTCCC
genomic: ACAATCATCAACAATCTCTTGAAATACCATCCGgtctgcctac ... tgttttgcagGAATGCAGTGAGCAACTTGCAATGGGTGAGACTTTTGGAATAAAGGCTCCC