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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCGGAAATTGCAGCGGGTGCAATGAATGATTATTTGTTGATGGAGCACATGCTTAAAGTCCATGTCATTGAACCAGAGAATGTTAAACCCAATCTgtgagtgattttaatcgactttttttcgtagtgatcagggatcttctttgcaaatagttagttggcatatctaattgtgtaggttagctattttacttgg...

Basic information

species Arabidopsis thaliana
transcript AT5G04600.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164204375|gb|ES019122.1|ES019122
EST:     CACATGCTTAAAGTCCATGTCATTGAACCAGAGAATGTTAAACCCAATCT                         GTGGAGAGGGTTTAAATGTAACTTCAAACCAGTGGATTCGGTTC
genomic: CACATGCTTAAAGTCCATGTCATTGAACCAGAGAATGTTAAACCCAATCTgtgagtgatt ... aatgttatagGTGGAGAGGGTTTAAATGTAACTTCAAACCAGTGGATTCGGTTC
EST: gi|125005525|gb|EL077794.1|EL077794
EST:     ATTGAACCAGAAGAATGTTAAACCCAATCT                         GTGGAGAGGGTTTAAATGTAACTTCAAACCAGTGGATTCGGTTCAGA
genomic: ATTGAACCAG-AGAATGTTAAACCCAATCTgtgagtgatt ... aatgttatagGTGGAGAGGGTTTAAATGTAACTTCAAACCAGTGGATTCGGTTCAGA
EST: gi|86074844|gb|DR370601.1|DR370601
EST:     CACATGCTTAAAGTCCATGTCATTGAMCC--AGAATGTTAAACCCAATCT                         GTGGAGAGGGTTTAAATGTAACTTCAAACCAGTGGATTCGGTTCAGATTGA
genomic: CACATGCTTAAAGTCCATGTCATTGAACCAGAGAATGTTAAACCCAATCTgtgagtgatt ... aatgttatagGTGGAGAGGGTTTAAATGTAACTTCAAACCAGTGGATTCGGTTCAGATTGA