Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTTCGAGGAGCAGATGCGGGCAATCGATTTGATTTTGGCTAAGCTTACTGAGGACGATCATTACTCCCAGAATGTGCATTCCCCATATTCATATGCAGgtatatcaactcagtacttgcttagttaggtttgttatcctccttgaagcttcttttgttatcgtgttctgtatgtctttgattgcatttattcatgttg...

Basic information

species Arabidopsis thaliana
transcript AT5G04430.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163988252|gb|ES195733.1|ES195733
EST:     TGAGGACGATCATTACTCCCAGGATGTGCATTCCCCATATTCATATGCAG                         CGGGATACAATTCGGTTAACTAC
genomic: TGAGGACGATCATTACTCCCAGAATGTGCATTCCCCATATTCATATGCAGgtatatcaac ... gttgcaacagCGGGATACAATTCGGTTAACTAC
EST: gi|125231316|gb|EL245401.1|EL245401
EST:     TGAGGACGATCATTACTCCCAGAATGTGCATTCCCCATATTCATATGCAG                         CGGGATACAATTCGGTTAACTACGCACCCAACG
genomic: TGAGGACGATCATTACTCCCAGAATGTGCATTCCCCATATTCATATGCAGgtatatcaac ... gttgcaacagCGGGATACAATTCGGTTAACTACGCACCCAACG
EST: gi|164172534|gb|EL996392.1|EL996392
EST:     TGAGGACGATCATTACTCCCAGGATGTGCATTCCCCATATTCATATGCAG                         CGGGATACAATTCGGTTAACTAC
genomic: TGAGGACGATCATTACTCCCAGAATGTGCATTCCCCATATTCATATGCAGgtatatcaac ... gttgcaacagCGGGATACAATTCGGTTAACTAC
EST: gi|86078249|gb|DR374006.1|DR374006
EST:     CTCCCAGAATGTGCATTCCCCATATTCATATGCAG                         C-GGATACAATTCGGTTAACTACGCACCCAACGGTTCTGGAGGCAAGTATC
genomic: CTCCCAGAATGTGCATTCCCCATATTCATATGCAGgtatatcaac ... gttgcaacagCGGGATACAATTCGGTTAACTACGCACCCAACGGTTCTGGAGGCAAGTATC