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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGCATTCAATCAAAGGAGAAAGTTGAAGCGAATTTGCTAAGCAAGTACGAGGCAACAATGAGAAGGGAAAGGGCATTGGCTTATTCATACTCTCATCAGgtactccagtcgttacctataatgctgaatgtgtggaaagatacaattaaaaagtgaacacatccattgaagttgaatctgtggttcatttgaatgttgtaatgatcctatatgttcatgtttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G03040.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G03040.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA13G20070.1 (Glycine max), 5'ss of exon 4
TAGCATTCAATCAAAGGAGAAAGTTGAAGCGAATTTGCTAAGCAAGTACGAGGCAACAATGAGAAGGGAAAGGGCATTGGCTTATTCATACTCTCATCAGgtactccagtcgttacctataatgctgaatgtgt-ggaaagatacaattaaaaagtgaacacatccat-tgaagttgaatctgtggttcatttgaatgttgtaatgatcctatatgttcatgtttgcag
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CAGCATACAATCAAAAGAACAAGTTGAAGCCAAGTTACTGAGCAAGTATGAAGCTGCTATGAGAAGAGAAAGAGCAATGGCTTATTCATTCTCTCATCAGgtttttaatttct--cttatgaatttacatttgttaggatagtgaaacaaacaaatggaaaaaaagatgtgaaagcaaattgttggtgaacttgaacatcat---------------------------

upper sequence: AT5G03040.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA10G05720.1 (Glycine max), 5'ss of exon 5
TAGCATTCAATCAAAGGAGAAAGTTGAAGCGAATTTGCTAAGCAAGTACGAGGCAACAATGAGAAGGGAAAGGGCATTGGCTTATTCATACTCTCATCAGgtactccagtcgttacctataatgctgaatgtgt--ggaaagatacaattaaa-----aagtgaacacatccattgaagttgaatctgtggttcatttgaatgttgtaatgatcctatatgttcatgtttgcag
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CAGCGTACAATCAAAAGAACAAGTTGAAGCCAAGTTACTGAGCAAGTATGAAGCTTCTATGAGAAGAGAAAGAGCAATGGCTTATTCATTCTCTCATCAGgttttttttatttctcttatgaatttacatttgttaggataaggatagtgaaacaaacaaatgaaaaaaataaatgaaagcaaattgttggtgaacttga----------------------------------

upper sequence: AT5G03040.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA19G36270.1 (Glycine max), 5'ss of exon 5
TAGCATTCAATCAAAGGAGAAAGTTGAAGCGAATTTGCTAAGCAAGTACGAGGCAACAATGAGAAGGGAAAGGGCATTGGCTTATTCATACTCTCATCAGgtactcc------agtcgttacctataatgctgaatgtgtggaaagatacaattaaaaagtgaacacatccattgaagttgaatctgtggttcat-ttgaatgttgtaatgatcctatatgttcatgtttgcag
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CAGCCTACAATCAAAAGAACAAATCGAAGCCAAGTTACTAAGCAAGTATGAGGCTACTATGAGAAGAGAAAGAGCACTGGCTTATGCATTCACTCATCAGgtttttttaaaaaaaaaaattctcatcaatttacacatgcgagaaaatg-ggtgaaaaatttaatacga--actgaaa---aatctttcaaaaatatcgcatatta----------------------------

upper sequence: AT5G03040.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv08s0040g02360.t01 (Vitis vinifera), 5'ss of exon 5
TAGCATTCAATCAAAGGAGAAAGTTGAAGCGAATTTGCTAAGCAAGTACGAGGCAACAATGAGAAGGGAAAGGGCATTGGCTTATTCATACTCTCATCAGgtactccagtcgttacctataatgctgaatgtgtggaaagatacaattaaaaagtgaacacatccattgaagttgaatctgtggttcatttgaatgttgtaatgatcctatatgttcatgtttgcag----------------------------------------------------------------------
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CAGCCTACAATCAAAAGAACAAATTGAAGCAGGCCTATTAAACAAGCAAGGGGCAGCAATGAGAAGAGAAAGGGCACTGGCTTATGCATTTTCTCATCAGgtatcctattcatca---atactgtttcctgccc---attatccatttttaggatcaaga-actcactg--gttggatcttccagttatcttggtat-gaaatggaaagaaaatcaaataccagtggtgcactcatgtagacacatgttttattattgcaaattcttgattaatccctgatggaattggtcctacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47828004|gb|CK117688.1|CK117688
EST:     AGGCAACAATGAGAAGGGAAAGGGCATTGGCTTATTCATACTCTCATCAG                         CAAAACTGGAAGAACAACTCTAAATCTGGAAACCCGATGTTCATGGATCCA
genomic: AGGCAACAATGAGAAGGGAAAGGGCATTGGCTTATTCATACTCTCATCAGgtactccagt ... atgtttgcagCAAAACTGGAAGAACAACTCTAAATCTGGAAACCCGATGTTCATGGATCCA