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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACACTTGTCCGGCAGGCCTCAATGATTTTCAAGTGTTTTTTGTTGATGTACTACAAAAACAGTAGGGGTCGGAATTATCGTAAACAGgtgatgtagaaaaatattcttctctgtcccctttagctgtattcagtttcatttggcatggctcactgtggcgtctctgggatacataatttggttattcacttccaatgcag

Basic information

species Arabidopsis thaliana
transcript AT5G01960.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G01960.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv08s0056g00440.t01 (Vitis vinifera), 5'ss of exon 4
ATACACTTGTCCGGCAGGCCTCAATGATTTTCAAGTGTTTTTTGTTGATGTACTACAAAAACAGTAGGGGTCGGAATTATCGTAAACAGgtgatgtagaaaaatattct-tctctgtcccctttagctgtattcagtttcatttggcatggc--tcactgtggcgtctctgggatacataatttggttattcacttccaatgcag
||||  | ||  |||||||  ||||| ||||||||||| || | |||||||||||||| ||||| || ||  | ||||||||||||||||| | |||  |  | ||| | | |         ||   |    | ||| |||||||   |     ||  | || |  |  |   | ||  | |   |  ||| | || | |     
ATACTTTGGTGAGGCAGGCAGCAATGGTTTTCAAGTGTATTCTATTGATGTACTACAAGAACAGCAGAGGCAGAAATTATCGTAAACAGgtaaggtaatatgaaattatgtgttaaagtagatttatttaggttagtatcatttgcatttatattctttttgtctgccattacacactgactccagacatttattttccag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164033678|gb|ES054192.1|ES054192
EST:     GTACTACAAAAACAGTAGGGGTCGGAATTATCGTAAACAG                         GGTCAATTGCTAACTTTGGTTGAATATT
genomic: GTACTACAAAAACAGTAGGGGTCGGAATTATCGTAAACAGgtgatgtaga ... tccaatgcagGGTCAATTGCTAACTTTGGTTGAATATT