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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTTGGTGCTCTGGCAATAGCAAAAATGCTATCTGTACCAATAGTAATGTCTTACCACACACACGTCCCTGTgtaagtacctttttctgcctcatttcacaatgttgttataaaaaaatttttgtctaagattaagcttgtgttgatgtgcag

Basic information

species Arabidopsis thaliana
transcript AT5G01220.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G01220.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G117153_T01 (Zea mays), 5'ss of exon 5
GTCTTTGGTGCTCTGGCAATAGCAAAAATGCTATCTGTACCAATAGTAATGTCTTACCACACACACGTCCCTGTgtaagtacctttttctgcc-tcatttcacaatgttgttataaaaa--aatttttgtctaagattaagcttg-tgttgatgtgcag---------------
||  | ||||||||||| ||||| |||||| |||| || |||||| | |||||||| ||||||||  | || | || ||| ||||||  ||   | || |     ||  |  | |  |     |||   | || |||  | || | |   ||| |                   
GTTCTCGGTGCTCTGGCTATAGCTAAAATGATATCGGTTCCAATATTGATGTCTTATCACACACATCTTCCAGCgtgagtcccttttgttgaaatgatattcttttgacgcaacatgagtttgtttccatgtatgatctaactaggtacagatctttcaaacattcaaagtagt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116409173|gb|EG451765.1|EG451765
EST:     AAAATGCTATCTGTACCAATAGTAATGTCTTACCACACACACGTCCCTGT                         ATACATCCCAAGATACACTTTTAGTTGGTTGGTAAAACCAATGTGGTCTAT
genomic: AAAATGCTATCTGTACCAATAGTAATGTCTTACCACACACACGTCCCTGTgtaagtacct ... tgatgtgcagATACATCCCAAGATACACTTTTAGTTGGTTGGTAAAACCAATGTGGTCTAT
EST: gi|116431123|gb|EG473715.1|EG473715
EST:     AAAATGCTATCTGTACCAATAGTAATGTCTTACCACACACACGTCCCTGT                         ATACATCCCAAGATACACTTTTAGTTGGTTGGTAAAACCAATGTGGTCTAT
genomic: AAAATGCTATCTGTACCAATAGTAATGTCTTACCACACACACGTCCCTGTgtaagtacct ... tgatgtgcagATACATCCCAAGATACACTTTTAGTTGGTTGGTAAAACCAATGTGGTCTAT
EST: gi|86057508|gb|DR353265.1|DR353265
EST:     AAAATGCTATCTGTACCAATAGTAATGTCTTACCACACACACGTCCCTGT                         ATACATCCCAAGATACACTTTTAGTTGGTTGGTAAAACCAATGTGGTCTAT
genomic: AAAATGCTATCTGTACCAATAGTAATGTCTTACCACACACACGTCCCTGTgtaagtacct ... tgatgtgcagATACATCCCAAGATACACTTTTAGTTGGTTGGTAAAACCAATGTGGTCTAT
EST: gi|116409166|gb|EG451758.1|EG451758
EST:     AAAATGCTATCTGTACCAATAGTAATGTCTTACCACACACACGTCCCTGT                         ATACATCCCAAGATACACTTTTAGTTGGTTGGTAAAACCAATGTGGTCTAT
genomic: AAAATGCTATCTGTACCAATAGTAATGTCTTACCACACACACGTCCCTGTgtaagtacct ... tgatgtgcagATACATCCCAAGATACACTTTTAGTTGGTTGGTAAAACCAATGTGGTCTAT
EST: gi|116409154|gb|EG451746.1|EG451746
EST:     AAAATGCGATCTGTACCAATAGTAATGTCTTACCACACACACGTCCCTGT                         ATACATCCCAAGATACACTTTTAGTTGGTTGGTAAAACCAATGTGGTCTAT
genomic: AAAATGCTATCTGTACCAATAGTAATGTCTTACCACACACACGTCCCTGTgtaagtacct ... tgatgtgcagATACATCCCAAGATACACTTTTAGTTGGTTGGTAAAACCAATGTGGTCTAT
EST: gi|116409155|gb|EG451747.1|EG451747
EST:     AAAATGCGATCTGTACCAATAGTAATGTCTTACCACACACACGTCCCTGT                         ATACATCCCAAGATACACTTTTAGTTGGTTGGTAAAACCAATGTGGTCTAT
genomic: AAAATGCTATCTGTACCAATAGTAATGTCTTACCACACACACGTCCCTGTgtaagtacct ... tgatgtgcagATACATCCCAAGATACACTTTTAGTTGGTTGGTAAAACCAATGTGGTCTAT