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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATAATGCCACCATCAGCCCTTGATCGTCTAGgtacattttcttcctttgcttaatgattccagcttctttttcggatttcatttgattatccagagccacttacatccatcactgtttacag

Basic information

species Arabidopsis thaliana
transcript AT4G38930.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G38930.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G037185_T01 (Zea mays), 5'ss of exon 4
TTATAATGCCACCATCAGCCCTTGATCGTCTAGgtacatt---ttcttcctttgcttaatgattccagc-ttctttttcggatttcatttga----ttatccagagccacttacatccatcactgtttacag-------------------------------------------
||||||||||||||||||| ||||||||||| ||||  ||     | | | || |||      |    | | |    |   | ||||| | |    || |   |    | || |  |  | | |   |  |                                            
TTATAATGCCACCATCAGCTCTTGATCGTCTTGgtaagttaggcacattcgttacttctcatctttgacatgcacaatgataattcatctaacatgttgtttggcaaaattttccacacttatttcctcaataagttctctattatgaaaaaataattttttggtttctctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86059107|gb|DR354864.1|DR354864
EST:     TTATAATGCCACCATCAGCCCTTGATCGTCTAG                         CTTCTTTGCAGATTGATTATCCAATGCTCTTTGAGCTTCGTAATGCTTCAA
genomic: TTATAATGCCACCATCAGCCCTTGATCGTCTAGgtacattttc ... ctgtttacagCTTCTTTGCAGATTGATTATCCAATGCTCTTTGAACTTCGTAATGCTTCAA
EST: gi|124716639|gb|EH808041.1|EH808041
EST:     GGTGACAAGATTATAATGCCACCATCAGCCCTTGATCGTCTAG                         CTTCTTTGCAGATTGATTATCCAATGCTCTTTGAACTTCGTAATGCTTCAA
genomic: GGTGACAAGATTATAATGCCACCATCAGCCCTTGATCGTCTAGgtacattttc ... ctgtttacagCTTCTTTGCAGATTGATTATCCAATGCTCTTTGAACTTCGTAATGCTTCAA