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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGATAGGACATGGAAGGTTTCTGAGTTGCATGGGTGGCGTTTGGCATCCTGAATGTTTCTGTTGCAATGCATGTGATAAGCCCATCATAGATTATGAGgtccctatacattttattaagtattattattgtatcctcctgattcttttgaagcttaacctgttcaagctttgttttacag

Basic information

species Arabidopsis thaliana
transcript AT4G36860.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G36860.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G017845_T02 (Zea mays), 5'ss of exon 4
TGAGATAGGACATGGAAGGTTTCTGAGTTGCATGGGTGGCGTTTGGCATCCTGAATGTTTCTGTTGCAATGCATGTGATAAGCCCATCATAGATTATGAGgtccctatacattttattaagtattattattgtatcctcctgattcttttgaagcttaacctgttcaagctttgttttacag
 ||||| || || ||  | ||||| ||||||||||| |  ||||||||||| ||||||||  ||||| ||||||||  | | || ||    || ||||||||  || |    |||| |   ||  | | || | ||    |  |    || ||||    | || |  ||             
AGAGATTGGTCACGGGCGTTTTCTCAGTTGCATGGGAGCTGTTTGGCATCCGGAATGTTTTCGTTGCCATGCATGTAGTCAACCTATATATGACTATGAGgtaacttttttgtttactttttagcagt-ttctttcaatgtactgaccttaaagc----catgctgcag-------------

upper sequence: AT4G36860.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA16G25750.1 (Glycine max), 5'ss of exon 5
TGAGATAGGACATGGAAGGTTTCTGAGTTGCATGGGTGGCGTTTGGCATCCTGAATGTTTCTGTTGCAATGCATGTGATAAGCCCATCATAGATTATGAGgtccctatacattttattaagtattat-tattgtatcctcctgattcttttgaagc-ttaacctgttcaagctttgttttacag-----------------------------------------------------------------------------------
 ||||| || |||||||| ||| ||||||||||||| ||   ||||||||| |||||||| |||||| |||| ||  |    || ||||  |||||||||||     |   || | ||   |  ||  |  |  ||    || | | || | |  | || |    |||   ||    |||| ||                                                                                   
CGAGATTGGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCAGAATGTTTTTGTTGCCATGCTTGCAAACTTCCAATCACTGATTATGAGgttagagtc--ttgtgttggttgctacatgcttcatgaaactcaattttataacacgtttaaacattctt-ctggaatttatagatgaagatctttaactttctttaccttaattttttgaggtcaatacgaatgaaaataatgcttaaatccttattcatttacag

upper sequence: AT4G36860.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 6
TGAGATAGGACATGGAAGGTTTCTGAGTTGCATGGGTGGCGTTTGGCATCCTGAATGTTTCTGTTGCAATGCATGTGATAAGCCCATCATAGATTATGAGgtccctatacatttta--ttaagtattattattgtatcctcctgattcttttgaagcttaacctgttcaagctttgttttacag------------------------------------------------------------
 ||||| || |||||||| | | |||||||||||||||  ||||||||||| ||||||||  |||||  ||| ||||     |||||  | ||  |||||||||  || || || |  || | | |  || | || |     ||  |  |   | ||||      | |||   |  |||| |||                                                            
CGAGATTGGTCATGGAAGATATTTGAGTTGCATGGGTGCTGTTTGGCATCCAGAATGTTTTCGTTGCCGTGCTTGTGGGCTTCCCATTTTTGAACATGAGgtccaaatccagttcagatttattctagttttggtctggcattggctaatgaaatgcttgg---atccaaagctgattttccagtaattttggtggttctatggaatgcacttgctaattttcattttttcctttctttgatag