Sequence
atgc intronic sequence ATGC exonic sequenceATGATGGTGGTGGGATGGATCCCGCTGGGCTCAGAAAATGCATGAGCTTAGGCTACTCATCAAAGAAGTCTAATACAACGATTGGACAGTgtaattgttttacttagttaatatgatcttgagctcgtttctagtcgggtggtcttgctgtcttggtttccgacaggtggtctctaaccagagcttcccttttgtgtttag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G36280.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G36280.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA02G05800.1 (Glycine max), 5'ss of exon 6
ATGATGGTGGTGGGATGGATCCCGCTGGGCTCAGAAAATGCATGAGCTTAGGCTACTCATCAAAGAAGTCTAATACAACGATTGGACAGTgtaattgttt-tacttagttaatatgatcttgagctcgtttctagtcgggtggtcttgctgtcttggtttccg-acaggt-ggtctctaaccagagcttcccttttgtgtttag
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ATGATGGTGGTGGAATGAACCCTAATGCAATTCGAAAATGCATGAGCTTGGGTTATTCATCAAAGAAGTCAAAGACAACGATTGGACAGTgtatctgaatatattttattcatttatttttctgcatgtggcttaaaaaactctaccatagttaatatttgcatatacattaatatctttttagaaggtg--------------
upper sequence: AT4G36280.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA16G24450.1 (Glycine max), 5'ss of exon 4
ATGATGGTGGTGGGATGGATCCCGCTGGGCTCAGAAAATGCATGAGCTTAGGCTACTCATCAAAGAAGTCTAATACAACGATTGGACAGTgtaattgt-tttacttagttaatatgatcttgagctcgtttctagtcgggtggtcttgctgtcttggtttccg-acaggt-ggtctctaaccagagcttcccttttgtgtttag
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ATGATGGTGGTGGAATGAACCCTAATGCAATTCGAAAATGCATGAGCTTGGGTTATTCATCAAAGAAGTCAAAGACAACAATTGGACAGTgtatctgaatttattttattcatttctttttctgcatgtgtcttaaagaactcttccatagttaatatttgcatatacattaatatcttcttaaaacatg--------------
upper sequence: AT4G36280.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv04s0023g02740.t01 (Vitis vinifera), 5'ss of exon 5
ATGATGGTGGTGGGATGGATCCCGCTGGGCTCAGAAAATGCATGAGCTTAGGCTACTCATCAAAGAAGTCTAATACAACGATTGGACAGTgtaattgttttacttagttaatatgatcttgagctcgtttctagtcgggtggtcttgctgtcttggtttccgacaggtggtctctaaccagagcttcccttttgtgtttag
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ATGATGGAGGTGGAATGGATCCTGAATCTATTCGGAAATGCATGAGCTTGGGTTACTCTTCAAAGAAGTCGAACACAACAATTGGACAATgtaattaccatg---agtttcttttgtcatttact-gttccttgtttgatgacaat--cattttggataattatacttg--cttctacatttctattcaaattgtggt---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19875617|gb|AU236448.1|AU236448EST: CATGAGCTTAGGCTACTCATCAAAGAAGTCTAATACAACGATTGGACAGT ATGGAAATGGTTTCAAGACAAGT-CCATGAGACTTGGAGCTGATGCTNTCG
genomic: CATGAGCTTAGGCTACTCATCAAAGAAGTCTAATACAACGATTGGACAGTgtaattgttt ... ttgtgtttagATGGAAATGGTTTCAAGACAAGTACCATGAGACTTGGAGCTGATGCTATCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGATGGTGGTGGGATGGATCCCGCTGGGCTCAGAAAATGCATGAGCTTAGGCTACTCATCAAAGAAGTCTAATACAACGATTGGACAGTgtaattgttttacttagttaatatgatcttgagctcgtttctagtcgggtggtcttgctgtcttggtttccgacaggtggtctctaaccagagcttcccttttgtgtttag
- - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT