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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTTCTGTTCAAATCAACCGAAGAAGGTTCATCTCTAAAGGCTACAGATTTTGGTCTGTCGGACTTCATAAAGCCAGgtaaaagtttcacttgtcaagtcttgtccctgagagcagaatggtagataatggaggtgattttgtgaaaatggcag

Basic information

species Arabidopsis thaliana
transcript AT4G36070.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G36070.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os02g03410.2 (Oryza sativa), 5'ss of exon 5
AATTTTCTGTTCAAATCAACCGAAGAAGGTTCATCTCTAAAGGCTACAGATTTTGGTCTGTCGGACTTCATAAAGCCAGgtaaaagtttcacttg--tcaagtcttgtccctgagagcagaatggtagataatggaggtgattttgtgaaaatggcag------------------------------------------
|| || || |||||||||||| | || |  ||| || ||||||| ||||||||||||||||| ||||||||||| |||||||    |||||   |  |    |  ||| | |    ||    || |    | ||  | |  |  | |||  | | ||                                           
AACTTCCTTTTCAAATCAACCAAGGAGGACTCACCTTTAAAGGCAACAGATTTTGGTCTGTCAGACTTCATAAAACCAGgtatttatttcaagagcttttgcttatgtgcatctttgctatgtgcttccaattgttgcttctgatttgagtaggacatacaagtctgcagttcattcattgttttctttcattactgtag

upper sequence: AT4G36070.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os07g22710.3 (Oryza sativa), 5'ss of exon 4
AATTTTCTGTTCAAATCAACCGAAGAAGGTTCATCTCTAAAGGCTACAGATTTTGGTCTGTCGGACTTCATAAAGCCAGgtaaaagtttcacttgtcaagtcttgtccctgagagcagaatggtagataatggaggtgattttgtgaaa-atggcag-----------------------
|| || || |||||||||||| |||| |  ||||| || |||||||||||||||||||| || || || ||||  ||||||    || |   |||| |   ||||| | |          || |  |   |           | ||||| ||   ||                       
AACTTCCTCTTCAAATCAACCAAAGAGGACTCATCCCTCAAGGCTACAGATTTTGGTCTTTCAGATTTTATAAGACCAGgtttgtgtgtatgttgtaactacttgttc-tattgttttcttgtttaactttcttccattccatatgaaatataaaagagaaaaatctctatttggccttg

upper sequence: AT4G36070.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G365035_T01 (Zea mays), 5'ss of exon 5
AATTTTCTGTTCAAATCAACCGAAGAAGGTTCATCTCTAAAGGCTACAGATTTTGGTCTGTCGGACTTCATAAAGCCAGgtaaaagttt---cacttgtcaagtct--tgtccctgagagcagaatggtagataatggaggtgattttgtgaaaatggcag-----------------------------
|| || || ||||||||||   | || |  ||  | || |||||||||||||||||||| || ||||||||||| ||||||  | |  |   ||  | |  |   |  ||| |   ||       || | ||   | |  ||   | |  |  |  ||                                
AACTTCCTATTCAAATCAAAAAAGGAGGACTCGCCCCTTAAGGCTACAGATTTTGGTCTTTCAGACTTCATAAAACCAGgtgcatgcatgcacatgtttttaacttaatgttctgtagttttccctgtttgacttttgcagtatgtgttagttataggttacacttaactattgttgcttgcaatcacag

upper sequence: AT4G36070.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G053868_T02 (Zea mays), 5'ss of exon 5
AATTTTCTGTTCAAATCAACCGAAGAAGGTTCATCTCTAAAGGCTACAGATTTTGGTCTGTCGGACTTCATAAAGCCAGgtaaa-agtttcacttgtcaagtcttgtc-----cctga---gagcagaatggtagataatggaggtgattttgtgaa--aatggcag------
|| || || |||||||| | | | || | |||| | |||||||| |||||||||||| |||| || ||||| ||||||||||   | ||       ||      ||||      ||||   | |||     | || | | |  |   |||||||     ||||   |      
AACTTCCTTTTCAAATCGAACAAGGAGGATTCACCACTAAAGGCGACAGATTTTGGTTTGTCAGATTTCATTAAGCCAGgtatctacttggggccatctgaatctgtcgggaatctgataggggcaagtctgcagttta-gctgaccattttgttgtctaatgcatgctttag

upper sequence: AT4G36070.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA02G05440.1 (Glycine max), 5'ss of exon 5
AATTTTCTGTTCAAATCAACCGAAGAAGGTTCATCTCTAAAGGCTACAGATTTTGGTCTGTCGGACTTCATAAAGCCAGgtaa----aagtttcacttgtcaagtcttgtccctgagagcagaat-------ggtagataatggagg-tgattttgtgaaaatggcag------------------------------------------------------------------
|||||||| || ||||||| | |||||| |||| || ||||||| |||||||||||| |||| || |||||||| || ||| |    |||| |   || ||| |     |  ||          |         |   |  || ||| |  || | |     |||  |                                                                  
AATTTTCTTTTTAAATCAATCAAAGAAGATTCACCTTTAAAGGCCACAGATTTTGGTTTGTCAGATTTCATAAAACCTGgtgagggaaagtcttgattttcatgctcaatttctttatttttcttttcttccattttttgttgcaggcttgttctatttctttggttgagttatcaagcatgctcttgtaattttatttgagatttatttttctctatctgaaaaaaaatgcag