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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTTCGAGATGACAAACAGTTTTTCATCGACCATCCTGGTGCTGTCCCTATTACCACTGTTCAGgtaagaatacagttatttcctcagtgcaattttatcagctttaccaccgttaagcattttccctctctgcatggaag

Basic information

species Arabidopsis thaliana
transcript AT4G35950.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G35950.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os02g02840.1 (Oryza sativa), 5'ss of exon 5
ATCTTCGAGATGACAAACAGTTTTTCATCGACCATCCTGGTGCTGTCCCTATTACCACTGTTCAGgtaagaatacagttatttcctcagtgcaatt--ttatcagctttaccacc-gttaagcattttccctctctgcatggaag-------------------------------------------------
|||||||||||||||| ||||||||  | ||||||||||||||||| ||||| ||||||| |||||||    |   |   | |     ||  ||||  ||||   || || || | |  | | | || |     |||      |                                                  
ATCTTCGAGATGACAAGCAGTTTTTTGTGGACCATCCTGGTGCTGTTCCTATCACCACTGCTCAGgtacagttgtggcattgtgggttgtttaattccttatttactgtagcatcagagatgtacttgcaactcctgtggactacattgccatatcttgatcatttttttgttccttaattgccacttttgtag

upper sequence: AT4G35950.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM5G846811_T01 (Zea mays), 5'ss of exon 5
ATCTTCGAGATGACAAACAGTTTTTCATCGACCATCCTGGTGCTGTCCCTATTACCACTGTTCAGgtaagaatacagttatttcctcagtgcaattttatcagctttaccaccgttaagcattttccctctctgcatggaag--------------------------------------------------------------
|||||||||| ||||| ||||| ||  | ||||||||||||||||||||||| || |||| ||||||| |  ||||| |  ||      | |     | |  ||| ||| |   |||   |  | |  |      |||| ||                                                              
ATCTTCGAGACGACAAGCAGTTCTTTGTGGACCATCCTGGTGCTGTCCCTATCACTACTGCTCAGgtatggttacaggtggtt------tactgccctgtttgctctacgagtattacataaatgctttg---agatggtagtcaagtttgtcctgatttgcctcgtgtcgagttactgttgtctaacacatggttatctatag

upper sequence: AT4G35950.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM5G803949_T02 (Zea mays), 5'ss of exon 5
ATCTTCGAGATGACAAACAGTTTTTCATCGACCATCCTGGTGCTGTCCCTATTACCACTGTTCAGgtaagaatacagttatttcctcagtgcaattttatcagctttaccaccgttaagcattttccctctctgcatggaag------------------------------------------------------------------------------------
|||||||||||||||| ||||| ||  | ||||||||||||||||| ||||| || |||| ||||||| |   |  | |  |||   | |    | ||  | ||| ||     || |  |||   |  |     |  ||                                                                                       
ATCTTCGAGATGACAAGCAGTTCTTTGTGGACCATCCTGGTGCTGTTCCTATCACTACTGCTCAGgtatggtcattggtgattc---actatcctgtttgctgctctaggga-gtaatacataaacgtttgagacccggtgaattttgtcaactactctgtcctggttttcttcttgtccggtgactgttgtctaacatggttaccttgccctcaccgccttatag

upper sequence: AT4G35950.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA16G23340.1 (Glycine max), 5'ss of exon 5
ATCTTCGAGATGACAAACAGTTTTTCATCGACCATCCTGGTGCTGTCCCTATTACCACTGTTCAGgtaagaatacagttatt-tcctcagtgcaattttat--cagctttaccaccgttaagcattttccctctctgcatggaag-------------------------------
| ||||||||||| || ||||| ||||| ||||||||||||||||| || |||||||| |||||||||    |  | || || |  |  |||  ||| | |    | |||||     |   ||||| |     |   | |                                    
ACCTTCGAGATGATAAGCAGTTCTTCATAGACCATCCTGGTGCTGTACCCATTACCACCGTTCAGgtatttttttattttttattttttgtgtgattctctagttgttttacatttctagtgcattcttgtaattaactttagtttttaatctaaaatttgcttatcttcttaaag

upper sequence: AT4G35950.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA11G08380.1 (Glycine max), 5'ss of exon 6
ATCTTCGAGATGACAAACAGTTTTTCATCGACCATCCTGGTGCTGTCCCTATTACCACTGTTCAGgtaagaatacagttatttcctcagtgcaattttatc-agctttaccaccg-ttaagcatt-ttccctctctgcatggaag
| ||||| ||||| || ||||| | |||||||||||||||||| || ||||||||||| | ||||||  |||||  |||       |  || ||  || |  || | |   |    ||||   |   |    |  | | |  |||
ACCTTCGGGATGATAAGCAGTTCTGCATCGACCATCCTGGTGCCGTACCTATTACCACAGCTCAGgt--gaatattgtttcgggtgctctggaaccttgtttagttatgtaataaattaaatctgacttgtgcattccctttaag

upper sequence: AT4G35950.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA02G05160.1 (Glycine max), 5'ss of exon 5
ATCTTCGAGATGACAAACAGTTTTTCATCGACCATCCTGGTGCTGTCCCTATTACCACTGTTCAGgtaagaatacagttatttcctcagtgcaatt--ttatcagctttaccaccgttaagcattttccctctctgcatggaag--------------------------------
| ||||||||||| || ||||| ||| | || ||||||||||| || || |||||||||||||| ||||| ||  | || ||       |  ||||  ||||  |||||||     |   |||| ||     ||    |                                     
ACCTTCGAGATGATAAGCAGTTCTTCGTAGATCATCCTGGTGCCGTACCCATTACCACTGTTCAAgtaagtat-tattttttgtggacctctaattgcttatttgctttacacttctagtgcatgtttgtaatcaatttttgttttttaatctaaaatttgctcatctttttgaag

upper sequence: AT4G35950.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA01G36880.3 (Glycine max), 5'ss of exon 6
ATCTTCGAGATGACAAACAGTTTTTCATCGACCATCCTGGTGCTGTCCCTATTACCACTGTTCAGgtaagaatacagttatttcctcagtgcaattttatc-agct--ttaccaccgttaagcattttccctctctgcatggaag
| ||||| ||||| || ||||| | ||| |||||||||||||| || ||||||||||| | |||||| || ||    ||   | |||  || ||| || |  || |  |||  |   | || |    |    |  | | | ||||
ACCTTCGGGATGATAAGCAGTTCTGCATTGACCATCCTGGTGCCGTACCTATTACCACAGCTCAGgtgagtattgttttgggtgctc--tggaatcttgtttagttatttaataaattaaatctgacttgtgcattcccttgaag

upper sequence: AT4G35950.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv04s0023g03860.t01 (Vitis vinifera), 5'ss of exon 6
ATCTTCGAGATGACAAACAGTTTTTCATCGACCATCCTGGTGCTGTCCCTATTACCACTGTTCAGgtaaga-ata------cagttatttcctcag-tgcaatttt--atcagc-tttaccaccgtta-------agcattttccctctctgcatggaag----------------------------
||||||| || ||||| ||||| ||||| ||||||||||||||||| || ||  |  | | |||||||| | ||       ||   |||  | ||| |  |||  |  ||  || ||||  |   ||        |  ||||||  | | ||  |                                 
ATCTTCGGGAAGACAAGCAGTTCTTCATAGACCATCCTGGTGCTGTGCCCATCTCTGCAGCTCAGgtaaaatatgatgtgtcaaacattatcacagatttaatccttaatttgcatttagaattttttgcaaaataatattttctttttttgttttatttatttgtatttattcatgtttcatccaag