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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGAAACTCCAATACTCTCTAGATCTACTCCAGAAGGCGCGCGAGATTATCTGGTTCCGTCAAGAATTCAGgtgccaatacttttttcatcctaatgtatttcccaacaaagaattaagtttccctgaagtataagcttatatcatagtttataggtctgattctatctaattttctttcgaag

Basic information

species Arabidopsis thaliana
transcript AT4G33760.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G33760.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA05G34820.1 (Glycine max), 5'ss of exon 5
ATTGAAACTCCAATACTCTCTAGATCTACTCCAGAAGGCGCGCGAGATTATCTGGTTCCGTCAAGAATTCAGgtgccaata-cttttttcatccta-atgtatttcccaacaaagaa-ttaagtttccctgaagtataagcttatatcatagtttataggtctgattctatctaattttctttcgaag
|||||||||||||| || || ||||| || |||||||| || || |||||| | ||||| |||||||| |||||    | | |||||  | || |  |||   ||   ||     |  ||  ||| | |   | ||| | | |  |   ||    |||  | | |  | ||                 
ATTGAAACTCCAATTCTGTCAAGATCCACACCAGAAGGTGCCCGGGATTATTTAGTTCCATCAAGAATCCAGgtatttagatcttttcacctcttgcatgagattattaatttgcagcttttgttgctcaagattatgatcatgaaatttatccaatatatttcaaaccatt----------------

upper sequence: AT4G33760.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G04870.1 (Glycine max), 5'ss of exon 5
ATTGAAACTCCAATACTCTCTAGATCTACTCCAGAAGGCGCGCGAGATTATCTGGTTCCGTCAAGAATTCAGgtgccaata-cttttttcatccta-atgtatttcccaacaaagaat-taagtttccctgaagtataagcttatatcatagtttataggtctgattctatctaattttctttcgaag
||||||||||| ||||| || ||||| || |||||||| || || |||||| | ||||| |||||||| |||||    | | |||||  | || |  |||   ||   |      | | |  ||| | |   | ||| | | |  |   ||    |||  | | |    ||                 
ATTGAAACTCCCATACTGTCAAGATCCACACCAGAAGGTGCCCGGGATTATTTAGTTCCATCAAGAATCCAGgtatttagatcttttcacctcttgcatgagattattattttgcagtatttgttgctcaagattatgatcatgaaatttatccaatatatttcaaatcatg----------------

upper sequence: AT4G33760.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv03s0088g00500.t01 (Vitis vinifera), 5'ss of exon 5
ATTGAAACTCCAATACTCTCTAGATCTACTCCAGAAGGCGCGCGAGATTATCTGGTTCCGTCAAGAATTCAGgtgccaatacttttttcatcctaatgtatttcccaacaaagaattaagtttccctgaagtataagcttatatcatagtttataggtctgattctatctaattttctttcgaag
||||| ||||||||||||||||||||||||||||| || || || |||||| |||| || |||||| ||||||| |      | | | ||||      |   |   ||      |||   || | || ||       |   |  |||    |   ||  | | | | |||  |  | |||     
ATTGAGACTCCAATACTCTCTAGATCTACTCCAGAGGGTGCTCGGGATTATTTGGTGCCCTCAAGAGTTCAGgtacttgacttgtatccatc------tgcctttaaatttgagatt---ttgctcttaatccatttccagttgcatgtgatcagggatttagtatttcttttcctttttg----