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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGTTTGTGGAGACACATGTTAGTCCTTGTCAAGTTGCGAAGAAAATGGCCAAGACTTTAATGTTTTTTGATGGCTGCCCGAAACCTTTGGGTTGTACAgtaagttccacaacattttaaggtgttttaagacattagatccttgacctgttattatgactatgcatattgtatgtctgatcaggaaataatcttaagtatggtgcttgatctgtctttctcag

Basic information

species Arabidopsis thaliana
transcript AT4G33240.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G33240.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os08g34950.1 (Oryza sativa), 5'ss of exon 4
AAAGTTTGTGGAGACACATGTTAGTCCTTGTCAAGTTGCGAAGAAAATGGCCAAGACTTTAATGTTTTTTGATGGCTGCCCGAAACCTTTGGGTTGTACAgtaagt-tccacaacattttaaggtgttttaagacattagatccttgacctgttattatgactatgcatattgtatgtctgatcaggaaataatcttaagtatggtgcttgatctgtctttctcag
 || | ||| ||    ||||  | | || |  ||| ||  |||||||||   |||||  | ||||||||||| |||||||| || || |||||||||||||||||| | ||     |      || | | |     ||| | |  | |||  || | ||   | ||||  |  | ||  | |||   |  ||||| | ||| ||                      
GAAATATGTTGAAGAGCATGGGACTGCTGGAGAAGGTGGAAAGAAAATGCTGAAGACCCTTATGTTTTTTGAAGGCTGCCCAAAGCCCTTGGGTTGTACAgtaagtattcagttgctaactcagtatctcag----ttataacacttaccatttgtcatatgt-tgcagctcctttgctttatct--atttaatccttagtctgtga-------------------

upper sequence: AT4G33240.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G153722_T01 (Zea mays), 5'ss of exon 4
AAAGTTTGTGGAGACACATGTTAGTCCTTGTCAAGTTGCGAAGAAAATGGCCAAGACTTTAATGTTTTTTGATGGCTGCCCGAAACCTTTGGGTTGTACAgtaagttccacaacattttaaggtgttttaagacattagatccttgacctgttattatgactatgcatattgtatgtctgatcaggaaataatcttaagtatggtgcttgatctgtctttctcag
 |||| ||| ||    ||||  |   || |  ||| || ||||||||||   ||||   | ||||||||||| ||||| || ||||| || |||||||||||||||      || ||||       | | |   | |     ||    || || | |||  |  ||||  |  || | |     || |    |  | | || || |   |               
GAAGTATGTTGAAGAGCATGGAACCGCTGGGGAAGGTGGGAAGAAAATGCTGAAGAACCTCATGTTTTTTGAAGGCTGTCCCAAACCGTTCGGTTGTACAgtaagtattt--accttttgg-----tctcaactactgtgctct--gtctttt-tcatgtgtgagcatggtaaatctgtaccttggtatacttaattactaaggggtaag---------------

upper sequence: AT4G33240.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA13G17510.1 (Glycine max), 5'ss of exon 4
AAAGTTTGTGGAGACACATGTTAGTCCTTGTCAAGTTGCGAAGAAAATGGCCAAGACTTTAATGTTTTTTGATGGCTGCCCGAAACCTTTGGGTTGTACAgtaagttccacaacattttaaggtgttttaagacattagatccttgacctgttattatgactatgcatattgtatgtctgatcaggaaataatcttaagtatggtgcttgatctgtctttctcag
 || ||| | |||   |||| |||| || | |||| || ||| |||    | |||||||| ||||| ||||| || |||||||||||||| ||||| || |||||||| | ||| ||  |   | || |   |||  | ||    |   ||||  ||     || || ||  |||  | |     ||| || |||  | |||| |  ||| | |           
CAAATTTTTTGAGGAGCATGGTAGTGCTGGGCAAGGTGGGAAAAAATCAACAAAGACTTTGATGTTCTTTGAGGGTTGCCCGAAACCTTTAGGTTGCACTgtaagttcaataactttaca---tattctggtacac-aaatttcag---tgttggtac----atacacatattattacagtctttgaattactct--attatg-tctttgttat-----------

upper sequence: AT4G33240.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv11s0016g00360.t01 (Vitis vinifera), 5'ss of exon 4
AAAGTTTGTGGAGACACATGTTAGTCCTTGTCAAGTTGCGAAGAAAATGGCCAAGACTTTAATGTTTTTTGATGGCTGCCCGAAACCTTTGGGTTGTACAgtaagttccaca---acattttaaggtgttttaagacattagatccttgacctgttat-tatgactatgcatattgtatgtctgatcaggaaataatcttaagtatggtgcttgatctgtctttctcag
 |||||| | ||    ||||  ||| || | |||| || ||||||| |||  |||||||| ||||||||||| || ||||| ||||||||||| ||||| ||||||| || |   | |  |  | ||| || |    |||  ||  | ||      |  ||| |   |  | |   ||||  |||| |  |    | ||  |                           
GAAGTTTCTTGAAGGGCATGGGAGTGCTGGGCAAGATGGGAAGAAATTGGTGAAGACTTTGATGTTTTTTGAGGGTTGCCCAAAACCTTTGGGCTGTACTgtaagtttcaaatatataaatagacgtgcttaagtctattctattttggaatgaaaaagtattatcttttagagcctatggatgataactagg--acctaca---------------------------