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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTATTGTCCATTGCGGATGAAACTTTAACAGAGTTCATTTCCAAGGCGACTGGAACCGCTGTCGAGTGGGTCCAAATGCCTGGGATGAAGgtaattctcataagtctatctcgtcttcttttatctatgattcaatcattttcacttccttactgactaatttcatctgcag

Basic information

species Arabidopsis thaliana
transcript AT4G32880.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G32880.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: AC187157.4_FGT005 (Zea mays), 5'ss of exon 4
ATTATTGTCCATTGCGGATGAAACTTTAACAGAGTTCATTTCCAAGGCGACTGGAACCGCTGTCGAGTGGGTCCAAATGCCTGGGATGAAGgtaattc------------tcataagt-ctatctcgtcttct--tttatctatgattca--atcattttcacttccttac-tgactaatttcatctgcag----------------------------------------------
  |  ||||||| ||||| || ||  | || |||||  | |||||||| || || ||||| |||||||||||||| ||||| |||||||||||   ||            |||  | | |||| |||  | ||  |||  || ||| |||  || || ||| ||||||  |  | || |  | | ||||                                                
GCTCATGTCCATAGCGGAGGAGACACTGACGGAGTTTCTGTCCAAGGCCACCGGCACCGCCGTCGAGTGGGTCCAGATGCCCGGGATGAAGgttggtcacggcctctgaatcactactactatttcgcttgcttgtttgcctctgaatcactattatattc-cttcctcgcgcggcttaactgaactgctccatcgttcttgcctacgtactctccattccatgggcacccttgcag

upper sequence: AT4G32880.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA06G09100.1 (Glycine max), 5'ss of exon 4
ATTATTGTCCATTGCGGATGAAACTTTAACAGAGTTCATTTCCAAGGCGACTGGAACCGCTGTCGAGTGGGTCCAAATGCCTGGGATGAAGgtaattctcataagtctatctcgtcttcttttatctatgattcaat--cattttcacttccttactgactaatttcatctgcag----------------------
| | ||||||||||| || || |||||| |||||||  |||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |            | |||  ||||    |||| |  | | |||  ||||| || || || |   |  || | ||||  |                        
ACTTTTGTCCATTGCAGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTCGAGTGGGTCCAAATGCCTGGGATGAAGgttaccgc-----acttttcttttctttccctatcaaacagttaatgccatttccatttactgaaaaaa-aagtacatccaccataaattaagcaaaaccaactta

upper sequence: AT4G32880.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA04G09000.1 (Glycine max), 5'ss of exon 1
-ATTATTGTCCATTGCGGATGAAACTTTAACAGAGTTCATTTCCAAGGCGACTGGAACCGCTGTCGAGTGGGTCCAAATGCCTGGGATGAAGgtaa--------ttctcataagtctatctcgtcttcttttatcta-tgattcaatcatt------ttcacttcctta--ctgactaatttcatctgcag-
 | | |||||||| || || || |||||| |||||||  |||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |        ||||  | |  || |    ||   || ||| || |||   ||| |||      | ||| | ||||   | |  ||    |  ||    
GACTTTTGTCCATCGCAGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTCGAGTGGGTCCAAATGCCTGGGATGAAGgttaccgcacttttcttttcaaactgttatttccatttctatttactgaaaaaataattagtacatccaccttcttaaattaagcaaaccaacttgttaa

upper sequence: AT4G32880.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv04s0008g03250.t01 (Vitis vinifera), 5'ss of exon 4
ATTATTGTCCATTGCGGATGAAACTTTAACAGAGTTCATTTCCAAGGCGACTGGAACCGCTGTCGAGTGGGTCCAAATGCCTGGGATGAAGgtaattctcataagtctatctcgtcttcttttatctatga----ttcaatcattttcacttccttactgactaa-tttcatctgcag--------------
| | ||||| ||||| || || ||||||||||||||  |||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||| | |  | |   |   | || | || ||| || |   |    ||  | |||| |   ||  | | ||| |||   | ||   ||               
ACTTTTGTCTATTGCAGAGGAGACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGgttactaccctcttttcctgtc-tattatttaatgtgctaaaccttgcaacattctactttattcattgattaaacctaataaacaaaaaagcttgctagc