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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACACAGCCTTTGACATCTTACCCTCCAAATCTTCGTAACGCTGGACCTGGTAATGATGTGCCTGAACCTTCAGCAGAGCCAGAATTTCCGACTCTAAGgtagatatcttctgttgcaactccgcagttttaagttcataaatttttaacaaaagcatacaatattttgttgggaaaatttcaacgtccttgctatatc...

Basic information

species Arabidopsis thaliana
transcript AT4G32760.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164096991|gb|EL977347.1|EL977347
EST:     GGTAATGATGTGCCTGAACCTTCAGCAGAGCCAGAATTTCCGACTCTAAG                         TTTGTCGGAGATTCAAAATGCAAAAGG
genomic: GGTAATGATGTGCCTGAACCTTCAGCAGAGCCAGAATTTCCGACTCTAAGgtagatatct ... tctttttcagTTTGTCGGAGATTCAAAATGCAAAAGG
EST: gi|163968314|gb|EL986043.1|EL986043
EST:     GGTAATGATGTGCCTGAACCTTCAGCAGAGCCAGAATTTCCGACTCTAAG                         TTTGTCGGAGATTCAAAATGCAAAAGG
genomic: GGTAATGATGTGCCTGAACCTTCAGCAGAGCCAGAATTTCCGACTCTAAGgtagatatct ... tctttttcagTTTGTCGGAGATTCAAAATGCAAAAGG
EST: gi|47828022|gb|CK117706.1|CK117706
EST:     GGTAATGATGTGCCTGAACCTTCAGCAGAGCCAGAATTTCCGACTCTAAG                         TTTGTCGGAGATTCAAAATGCAAAAGGTATCATGGATGTGCTTGCGGAGAT
genomic: GGTAATGATGTGCCTGAACCTTCAGCAGAGCCAGAATTTCCGACTCTAAGgtagatatct ... tctttttcagTTTGTCGGAGATTCAAAATGCAAAAGGTATCATGGATGTGCTTGCGGAGAT
EST: gi|86063775|gb|DR359532.1|DR359532
EST:     GGTAATGATGTGCCTGAACCTTCAGCAGAGCCAGAATTTCCGACTCTAAG                         TTTGTCGGAGATTCAAAATGCAAAAGGTATCATGGATGTGCTTGCGGAGAT
genomic: GGTAATGATGTGCCTGAACCTTCAGCAGAGCCAGAATTTCCGACTCTAAGgtagatatct ... tctttttcagTTTGTCGGAGATTCAAAATGCAAAAGGTATCATGGATGTGCTTGCGGAGAT