Sequence
atgc intronic sequence ATGC exonic sequenceAATTTTTGGGTGGACATTAAAGGACCTCAATTAGCACTTTTGCCAGTTCTTGCATTCGAAGGAGGAACACGAAGAAATATTCCCAAGTTTGAGgcatgtacattctgatgactcaggaagctctcttgaattctcatttgggatatgacattctctatgaattgattgtttctggaatgttcaaatttttgtgtactaaacag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G32175.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G32175.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA02G12480.1 (Glycine max), 5'ss of exon 6
AATTTTTGGGTGGACATTAAAGGACCTCAATTAGCACTTTTGCCAGTTCTTGCATTCGAAGGAGGAACACGAAGAAATATTCCCAAGTTTGAGgcatgtacattctgatgactcaggaagctctcttgaattctcatttgggatatgacattctcta--tgaattgattgtttctggaatgttcaaatttttgtgtactaaacag
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AACTTTCTTGTTGACATAAAAGGGCCAGCTTTAGCATTTTTACCAGTGCTTGCATTTGAAGGAGGAACTAGAAGAAATATACCTAGGTTTGAGgtgagcataaattatttttgcatgcgaattgcttaaaattttgtttgatgtttaatgactcagaagtagaagaatgacatatgttgtgtgtagttttgga------------
upper sequence: AT4G32175.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA01G06540.1 (Glycine max), 5'ss of exon 7
AATTTTTGGGTGGACATTAAAGGACCTCAATTAGCACTTTTGCCAGTTCTTGCATTCGAAGGAGGAACACGAAGAAATATTCCCAAGTTTGAGgcatgtacattctgatgactcaggaagctctcttgaattctcatttgggatatgacattctctatgaattgattgtttctggaatgttcaaatttttgtgtactaaacag
|| ||| |||||||| |||||||| |||||| |||| || || |||||||| ||||||||||| |||||||||| || | |||||||| || | | | | | | || | | || | ||| | || ||| | ||| || | | ||| ||| | | | |
AACTTTCTTGTGGACATAAAAGGACCAACTTTAGCATTTTTACCGGTGCTTGCATTTGAAGGAGGAACTAGAAGAAATATACCTAGGTTTGAGgtgtgcataaaatacttcgtttttagtttcagtaaatcacttcatctctttatctgcgtggtta-gaacttatttttgaggaagtgtagaaacatgtttat---------
upper sequence: AT4G32175.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv17s0000g08490.t01 (Vitis vinifera), 5'ss of exon 5
AATTTTTGGGTGGACATTAAAGGACCTCAATTAGCACTTTTGCCAGTTCTTGCATTCGAAGGAGGAACACGAAGAAATATTCCCAAGTTTGAGgcatgtacattctgatgactcagg--aagctctcttgaattctcatttgggatatgacattctctatgaat--tgattgtttctggaatgttcaaatttttgtgtactaaacag
|||||| |||||||| ||||||||| ||| ||| || |||| || |||||||| |||||||||||| | |||||||| ||||||||||||| || | | || | | |||| | | | | || | ||| | || | || | | || || ||| |||| | || |||
AATTTTCTTGTGGACATCAAAGGACCTGCATTGGCATTTCTGCCTGTGCTTGCATTTGAAGGAGGAACAAGGAGAAATATACCCAAGTTTGAGg--tgaaagtcctaaagtctcaagtcatgttgattttatgaatcagtgctaatgcaatatgatgtttgcatggcgatatcaaatggatttgataagcacttg------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164097902|gb|EL971360.1|EL971360EST: AGTTCTTGCATTCGAAGGAGGAACACGAAGAAATATTCCCAAGTTTTGAG GTAGGCACTCTGCTTTATCTCCGGGTTGTCAAG-CAAACATAGGAA
genomic: AGTTCTTGCATTCGAAGGAGGAACACGAAGAAATATTCCCAAGTTT-GAGgcatgtacat ... tactaaacagGTAGGCACTCTGCTTTATCTCCGGGTTGTCAAGACAAACATAGGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATTTTTGGGTGGACATTAAAGGACCTCAATTAGCACTTTTGCCAGTTCTTGCATTCGAAGGAGGAACACGAAGAAATATTCCCAAGTTTGAGgcatgtacattctgatgactcaggaagctctcttgaattctcatttgggatatgacattctctatgaattgattgtttctggaatgttcaaatttttgtgtactaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA