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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGAACGCACTGTGCGGAGCGGCCTCTACGTCGGGCGAGTGGAAAAAAGGCTGGCCTATGCGATCCGGTGATTTAGCTTCTCTCTGCGATAAGTGTGGgtaagggccttcactcttgtgtctaatttgaatacttttgcgaccagttcgatattcgcaacacttctgcgatagattagtgctgtgggtttgcttacaattagaacaagagtgggtacgtgaagggaatctatatttcatgattacttattagtaaactctgtgaatgttggtttttgatag

Basic information

species Arabidopsis thaliana
transcript AT4G32010.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G32010.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv08s0058g01300.t01 (Vitis vinifera), 5'ss of exon 2
GCATGAACGCACTGTGC---GGAGCGGCCTCTACGTCGGG---CGAGTGGAAAAAAGGCTGGCCTATGCGATCCGGTGATTTAGCTTCTCTCTGCGATAAGTGTGGgtaagggccttcactcttgtgtctaatttgaatacttttgcgaccagttcgatattcgcaacacttctg--cgatagattagtgctgtgggtttgcttacaattagaacaagagtgggtacgtgaagggaatctatatttcatgattacttattagtaaactctgtgaatgttggtttttgatag
      |||    ||||   || ||| | ||   ||||     |||||||| |||||| ||| || ||||||| |||||||| ||   ||||||||||||||| ||||||      |   |||  | |    | |   || ||      | | ||  ||   |  || |||| ||  |  |  | | |   | |||||||  |     ||                                                                                 
------ACGTGTCGTGCCCCGGGGCGTCGTCGGGGTCGACGATCGAGTGGAGAAAAGGTTGGGCTTTGCGATCTGGTGATTTCGCCATTCTCTGCGATAAGTGCGGgtaatccagatggatctcttcttccttgttgttattt-----gctaatttaatgcactaaatacttatggactgtgtactggatatatgggtttaatggaggttt--------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116432611|gb|EG475203.1|EG475203
EST:     GGCTGGCCTATGCGATCCGGTGATTTAGCTTCTCTCTGCGATAAGTGTGG                         GTGTGCATACGAGCAATCCATATTCTGTGAAGTGTTCCATGCCAAGGAATC
genomic: GGCTGGCCTATGCGATCCGGTGATTTAGCTTCTCTCTGCGATAAGTGTGGgtaagggcct ... tttttgatagGTGTGCATACGAGCAATCCATATTCTGTGAAGTGTTCCATGCCAAGGAATC