1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGAACATTGAGTGGTTACATAAGGATAAGGAGCAAGACGCAAGGGATTGCTCTAAGTCTTGGAGACAAAATCACCCTCAAACAAAAGGGTGGTAGCTGAGgttagctaatcttttggaaacattttctatctctcaatgcaatccataaatgtttgaatccttaaacttttaattggtctaattttcattaccataacgatgatttctcacag
species | Arabidopsis thaliana |
transcript | AT4G31490.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGTAGCTGAG GCTTGGAATGATAGCGTGCAAGGTAAAAGGTAAAAGGTTTAGGCTACGTTTEST: gi|125246440|gb|EL260525.1|EL260525
genomic: TGGTAGCTGAGgttagctaat ... tttctcacagGCTTGGAATGATAGCGTGCAAGGTAAAAGGTAAAAGGTTTAGGCTACGTTT
EST: TCTAAGTCTTGGAGACAAAATCACCCTCAAACAAAAGGGTGGTAGCTGAG GCTTGGAATGATAGCGTGCAAGGTAAAAGGTAAAAGGEST: gi|116462438|gb|EG505030.1|EG505030
genomic: TCTAAGTCTTGGAGACAAAATCACCCTCAAACAAAAGGGTGGTAGCTGAGgttagctaat ... tttctcacagGCTTGGAATGATAGCGTGCAAGGTAAAAGGTAAAAGG
EST: TCTAAGTCTTGGAGACAAAATCACCCTCAAACAAAAGGGTGGTAGCTGAG GCTTGGAATGATAGCGTGCAAGGTAAAAGGTAAAAGGTTTAGGCTACGTTT
genomic: TCTAAGTCTTGGAGACAAAATCACCCTCAAACAAAAGGGTGGTAGCTGAGgttagctaat ... tttctcacagGCTTGGAATGATAGCGTGCAAGGTAAAAGGTAAAAGGTTTAGGCTACGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAACATTGAGTGGTTACATAAGGATAAGGAGCAAGACGCAAGGGATTGCTCTAAGTCTTGGAGACAAAATCACCCTCAAACAAAAGGGTGGTAGCTGAGgttagctaatcttttggaaacattttctatctctcaatgcaatccataaatgtttgaatccttaaacttttaattggtctaattttcattaccataacgatgatttctcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA