Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCTGCTTAATTGAGCTCATGAAATTCGATATGGGAGGTTCAGCTGCTGTTCTTGGCGCTGCAAAAGCCATTGGTCAAATTAAGCCTCCAGGTGTTGAGgtaagtttatcacacggagcttgcgtttctgagttaaatgaatgtacctaaacaaatgcttcgttgcacaatcag

Basic information

species Arabidopsis thaliana
transcript AT4G30920.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G30920.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA02G36530.1 (Glycine max), 5'ss of exon 5
TGGCTGCTTAATTGAGCTCATGAAATTCGATATGGGAGGTTCAGCTGCTGTTCTTGGCGCTGCAAAAGCCATTGGTCAAATTAAGCCTCCAGGTGTTGAGgtaagt---ttatcacacggagcttgcgtttctgagttaaatgaatgt------acctaaacaaatgcttcgttgcacaatcag----------------
|||||| | |||||||||||||||||| |||||||| |||||||| || ||| | ||  | ||||||||  | |||||||| || ||||  || || ||||| |||   ||||  ||  |  | ||  ||| |   |  |  |||| |         | |   | |      | | |   | ||                
TGGCTGTTCAATTGAGCTCATGAAATTTGATATGGGTGGTTCAGCAGCAGTTTTAGGAACAGCAAAAGCTCTCGGTCAAATCAAACCTCTTGGGGTGGAGgtcagtcatttatgtcattggtcatgactttttctttgcatagaatatcatttggtttgattgattagcatttggtatcctaagtctttctatctttcaa

upper sequence: AT4G30920.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA17G08150.1 (Glycine max), 5'ss of exon 5
TGGCTGCTTAATTGAGCTCATGAAATTCGATATGGGAGGTTCAGCTGCTGTTCTTGGCGCTGCAAAAGCCATTGGTCAAATTAAGCCTCCAGGTGTTGAGgtaagt---ttatcacacggagcttgcgtttctgagttaaatgaatg-tacctaaacaaatgcttcgttgcacaatcag---------------------
|||||| | |||||| ||||||||||| |||||||| |||||||| || ||| | ||  | || |||||  |||||||||| || |||| ||| || ||||| |||   ||||  ||     | ||  ||| |   |  |  ||||   |  |      ||   | ||||||   |                        
TGGCTGTTCAATTGAACTCATGAAATTTGATATGGGTGGTTCAGCAGCAGTTTTAGGAACAGCGAAAGCTCTTGGTCAAATCAAACCTCTAGGGGTGGAGgtcagtcatttatgtcaatagtcatgtctttttctttgcatagaataacatttggtttgattgattgttgcatggtatcctatgtttttctatctttcaa

upper sequence: AT4G30920.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv11s0037g00180.t01 (Vitis vinifera), 5'ss of exon 5
TGGCTGCTTAATTGAGCTCATGAAATTCGATATGGGAGGTTCAGCTGCTGTTCTTGGCGCTGCAAAAGCCATTGGTCAAATTAAGCCTCCAGGTGTTGAGgtaagtttatcaca-----cggagcttgcgtttctgagttaaatgaatgtaccta-aacaaatgcttcgttgcacaatcag---------------------------------------------------------------------------
|||||| |  |||||||||||||| || |||||||| ||||||||||| ||||| || || ||||||||||||||||||||||| ||| | || || ||||||||    |          |  | |  | ||  |   ||   | ||  | | |  ||||| | |||   |   | ||  |                                                                           
TGGCTGTTCTATTGAGCTCATGAAGTTTGATATGGGGGGTTCAGCTGCGGTTCTCGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAGgtaagccagttgttgttgttgttgttatcattgtttgtttgttttaacttgcatggaacaatttcttaactaatccatttgtatgttctattttcaattctccagcaattgaatctagcatacacttatgacttattaagggtcttgtatttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125083386|gb|EL143964.1|EL143964
EST:     AGCCATTGGTCAAATTAAGCCTCCAGGTGTTTGAG                         GTGCACTTTATTGTCGCAGCTTGTGAGAATATGATAAGTGGTACTGGAAT
genomic: AGCCATTGGTCAAATTAAGCCTCCAGGTG-TTGAGgtaagtttat ... gcacaatcagGTGCACTTTATTGTCGCAGCTTGTGAGAATATGATAAGTGGTACTGGAAT