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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGACTTGGACACTCTAAGAGGGAGTGGTATAGTGGATGGAGCTGCATGACCACTCTTATACAGAAGGGATTAGTGGTGAAATCTAGCAACCCAGCAAAgtaaaagctcttatctgaaactctgccttatggtgcccttgacttgtattttttgtgaagaagtagaacttatcttgagacttcattgtttcttatcttag

Basic information

species Arabidopsis thaliana
transcript AT4G30870.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G30870.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv13s0019g01290.t01 (Vitis vinifera), 5'ss of exon 5
CAGGACTTGGACACTCTAAGAGGGAGTGGTATAGTGGATGGAGCTGCATGACCACTCTTATACAGAAGGGATTAGTGGTGAAATCTAGCAACCCAGCAAAgtaaaagctcttatctgaaactctgccttatggtgcccttgacttgtattttttgtgaagaagtagaacttatcttgagacttcattgtttcttatcttag--
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GGCATTTTGGAAGTTCTTCTAGGGAATGGTATAGTGGATGGAGCTGCATGAAGACATTGATAACCAAAGGACTAGTTGTGAAATCTAGTTGCCCTGCGAAgtata-gccctcaattgcaatttttcatctccccttttctgg-ttatatgcatcatgaattggttttattt-tctggaaaaatttttatatgttcatttgttg