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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGACACAGAATCTTTGAAAGCAGCTATGTCCTCGGCCCTCGATGTAATGCAGGCTATGGGATCGTCCATTTGGTCTTTACTCTCAAAGgtgagacctgtttaataaatgagttttccaaattatcctcttgacataactctcacgtggggtgcactgctctttatgatttgtatttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G30710.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G30710.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv11s0037g00560.t01 (Vitis vinifera), 5'ss of exon 4
GCGGACACAGAATCTTTGAAAGCAGCTATGTCCTCGGCCCTCGATGTAATGCAGGCTATGGGATCGTCCATTTGGTCTTTACTCTCAAAGgtgagacctgtttaataaatgagttt-tccaaattatcctcttgacataactctcacgtggggtgcactgctctttatgatttgtatttg----cag-------
|| || |  ||| || ||||    ||||| | ||| ||  | ||||| |||||||| |||||||| ||||| ||  |||||||||||| |||||||  | | |  |   ||  ||| | |  ||| |  |||| |||||  ||| | ||    |   ||  |  || || ||    ||||    |||       
GCAGATATCGAAACTGTGAAGCTTGCTATCTGCTCAGCTGTTGATGTGATGCAGGCAATGGGATCCTCCATATGTGCTTTACTCTCAAGGgtgagatttatgttttttgtgcttttgttctgattgtggtcttcacata--tctaatgttaatttagct--ttcttgtggttctcttttgacttcagtaccttt