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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGGCTGGAATGCTTTGCAAGTTGGGAAGGATTCTGAAATTTTGGATGATGTTGGAAACCGTCATGTCTATTTTGTTCATTCGTACAGGGCCATTCCAgtatggatctaaataatctcttctttctttctgtcattttcgtatctctaccatattgtattctcttctacatgcatgtgataattatagtttcataatttctatag

Basic information

species Arabidopsis thaliana
transcript AT4G26900.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G26900.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA18G10460.1 (Glycine max), 5'ss of exon 5
-CATTGGCTGGAATGCTTTGCAAGTTGGGAAGGATTCTGAAATTTTGGATGATGTTGGAAACCGTCATGTCTATTTTGTTCATTCGTACAGGGCCATTCCAgtatggatctaaataatctcttctttctttctgtcattttcg-tatctctaccatattgtattctcttctacatgcatgtga-taattatagtttcataatttctatag
  ||||||||||||||||| ||| |     |||| || | ||||||||||||||||||||| |  |||||||||||||| || || ||  | ||||| || |||||  || |  |  ||| |    ||||  |||    || | | || |   | || | |||    |  |  | |  | | | ||||   | |||  | ||||    | 
ATATTGGCTGGAATGCTTTACAAATCACCGAGGACTCGGGAATTTTGGATGATGTTGGAAATCACCATGTCTATTTTGTGCACTCTTATCGTGCCATGCCtgtatgtttccacttt-tctttgaaatcttcttgttgccttggctgtcacattcttactctatatattcatgaaagtgtttaagtaatctgacttttttcattttctca-

upper sequence: AT4G26900.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA18G12920.1 (Glycine max), 5'ss of exon 5
CATTGGCTGGAATGCTTTGCAAGTTGGGAAGGATTCTGAAATTTTGGATGATGTTGGAAACCGTCATGTCTATTTTGTTCATTCGTACAGGGCCATTCCAgtatggatctaaataatctcttctttctttctgtcattttcg-tatctctaccatattgtattctcttctacatgcatgtga-taattatagtttcataatttctatag
 ||||||||||||||||| ||| |     |||| || | ||||||||||||||||||||| |  |||||||||||||| || || ||  | ||||| || |||||  || |  |  ||| |    |||   |||    || | | || |   | || | |||    |  |  | |  | | | ||||   | |||  | ||||    ||
TATTGGCTGGAATGCTTTACAAATCACTGAGGACTCGGGAATTTTGGATGATGTTGGAAATCACCATGTCTATTTTGTGCACTCTTATCGTGCCATGCCTgtatgtttccacttt-tctttgaaatctccttgttgccttggctgtcacgttcttactctatatattcatgaaagtgtttaagtaatctgacttttttcattttctcag

upper sequence: AT4G26900.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv19s0090g00810.t01 (Vitis vinifera), 5'ss of exon 4
CATTGGCTGGAATGCTTTGCAAGTTGGGAAGGATTCTGAAATTTTGGATGATGTTGGAAACCGTCATGTCTATTTTGTTCATTCGTACAGGGCCATTCCAgtatggatctaaataatctcttctttctttctgtcattttcgtatctctaccatattgtattctcttctacatgca-tgtgataattatagtttcataatttctatag---
 ||||| ||||||||||| ||    | ||| || |||||||||||||||||| ||||||| ||||||||||||||||||||||| ||| | ||||| ||||||||           | |   ||| |||  ||    || | ||| || || |  |  |  | |    | |||| | |    | ||   |||| |   |||| |   |   
TATTGGATGGAATGCTTTACACACAGTGAAAGACTCTGAAATTTTGGATGATATTGGAAAGCGTCATGTCTATTTTGTTCATTCTTACCGTGCCATGCCAgtatg-----------ttttcccttgcttgttgct-cttccatatttcaactaactatttctttgacttgcatgaagttccctgatctaagttcctctatttttcctgtag